[Home] | [Total List]

[193884_at] Yeast 107.9KD PGK1-MAK32 intergenic hypothetical protein

Description T04A8.12 /REP_DB=WormBase Gene ID /WP=CE01067 /TR=Q22141 /GB=CAA84731.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Yeast 107.9KD PGK1-MAK32 intergenic hypothetical protein
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 60      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 63      6grp_total > 80      4grp_total > 51      6grp_highest_sub > 04      6grp_cgc > 95      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 485.9
(0)
P 		572.4
(3)
P 		564.5
(2.7)
P 		398.7
(-3)
P 		174
B 490
(-1)
P 		569.4
(3)
P 		450.1
(-3)
P 		466.8
(-2.2)
P 		119
C 496.9
(-1.8)
P 		572.8
(3)
P 		533.4
(0.5)
P 		478.3
(-3)
P 		94
avr 490.9
(-0.9) 		571.5
(3) 		516
(0.3) 		447.9
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 759.9
(2.9)
P 		549.2
(-2.2)
P 		600.1
(-1)
P 		763.8
(3)
P 		655.3
(0.4)
P 		517.8
(-3)
P 		246
B 529.9
(-3)
P 		551.5
(-2.3)
P 		551.2
(-2.3)
P 		721.2
(3)
P 		595.8
(-0.9)
P 		596.4
(-0.9)
P 		191
C 569.3
(-2)
P 		554.7
(-2.3)
P 		666.9
(0.1)
P 		798
(3)
P 		556.3
(-2.3)
P 		524.4
(-3)
P 		274
avr 619.7
(-0.9) 		551.8
(-2.8) 		606.1
(-1.3) 		761
(3) 		602.5
(-1.4) 		546.2
(-3) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 176.9
(3)
P 		124.2
(0.3)
P 		147.6
(1.5)
P 		58.4
(-3)
P 		119
B 156.2
(3)
P 		140.6
(1.3)
P 		104.3
(-2.5)
P 		99.5
(-3)
P 		57
C 164.5
(1.8)
P 		164.7
(1.8)
P 		185.9
(3)
P 		80.7
(-3)
P 		105
avr 165.9
(3) 		143.2
(1.4) 		145.9
(1.6) 		79.5
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 140.1
(-1.8)
P 		195.3
(2.8)
P 		130.7
(-2.6)
P 		193.7
(2.7)
P 		197.7
(3)
P 		126.1
(-3)
P 		72
B 184.4
(-0.2)
P 		183.6
(-0.2)
P 		133.8
(-3)
P 		191
(0.2)
P 		242.1
(3)
P 		222.4
(1.9)
P 		108
C 211
(3)
P 		169.3
(-2)
P 		169.7
(-1.9)
P 		160.5
(-3)
P 		180
(-0.7)
P 		175.5
(-1.2)
P 		51
avr 178.5
(0.3) 		182.7
(0.7) 		144.7
(-3) 		181.7
(0.6) 		206.6
(3) 		174.7
(-0.1) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7314
Sequence Type Exemplar sequence
Representative Public ID T04A8.12 NCBI
Target Description T04A8.12 /REP_DB=WormBase Gene ID /WP=CE01067 /TR=Q22141 /GB=CAA84731.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Yeast 107.9KD PGK1-MAK32 intergenic hypothetical protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065565 NCBI Caenorhabditis elegans T04A8.12 (T04A8.12) mRNA, complete cds. 11/11 None
SNAP00000041100 ENSEMBL cdna:SNAP chromosome:CEL140:III:4705481:4706751:1 11/11 None
GENEFINDER00000041113 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4705481:4706751:1 11/11 None
T04A8.12 ENSEMBL cdna:known chromosome:CEL140:III:4705347:4706751:1 gene:T04A8.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4705346-4706751(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast 107.9KD PGK1-MAK32 intergenic hypothetical protein
Ensembl T04A8.12
Entrez Gene 188041 Entrez gene
SwissProt Q22141 EMBL-EBI
WormBase CE01067 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.9789.1.S1_S_AT similar to FGF receptor activating protein 1 cfa
DROSOPHILA_2:1633099_AT dm
DROSGENOME1:142617_AT dm
CHICKEN:GGA.11713.1.S1_S_AT similar to FGF receptor activating protein 1 isoform gga
CHICKEN:GGAAFFX.25278.1.S1_AT similar to FGF receptor activating protein 1 isoform gga
HG-U133_PLUS_2:215293_S_AT FGF receptor activating protein 1 hs
HG-U133A_2:215293_S_AT FGF receptor activating protein 1 hs
HG-U133A:215293_S_AT FGF receptor activating protein 1 hs
HU35KSUBA:RC_AA478740_AT FGF receptor activating protein 1 hs
U133_X3P:HS.133968.2.S1_3P_S_AT FGF receptor activating protein 1 hs
HG-U133A_2:41858_AT FGF receptor activating protein 1 hs
HG-FOCUS:41858_AT FGF receptor activating protein 1 hs
HG-U133_PLUS_2:41858_AT FGF receptor activating protein 1 hs
HG-U133A:41858_AT FGF receptor activating protein 1 hs
HG-U95AV2:41858_AT FGF receptor activating protein 1 hs
HG-U95E:71154_I_AT FGF receptor activating protein 1 hs
HG-U95E:71156_F_AT FGF receptor activating protein 1 hs
MG-U74AV2:97888_AT FGF receptor activating protein 1 mm
MOE430A:1424614_AT FGF receptor activating protein 1 mm
MOUSE430A_2:1424614_AT FGF receptor activating protein 1 mm
MOUSE430_2:1424614_AT FGF receptor activating protein 1 mm
MOE430A:1424616_S_AT FGF receptor activating protein 1 mm
MOUSE430A_2:1424616_S_AT FGF receptor activating protein 1 mm
MOUSE430_2:1424616_S_AT FGF receptor activating protein 1 mm
MOE430A:1424615_AT FGF receptor activating protein 1 mm
MOUSE430A_2:1424615_AT FGF receptor activating protein 1 mm
MOUSE430_2:1424615_AT FGF receptor activating protein 1 mm
MU11KSUBB:Z31053_AT FGF receptor activating protein 1 (Frag1), mRNA mm
RN-U34:U57715_AT FGF receptor activating protein 1 rn
RG-U34A:U57715_AT FGF receptor activating protein 1 rn
RAE230A:1370204_AT FGF receptor activating protein 1 rn
RAT230_2:1370204_AT FGF receptor activating protein 1 rn
RAE230A:1370203_AT FGF receptor activating protein 1 rn
RAT230_2:1370203_AT FGF receptor activating protein 1 rn
RAE230B:1379667_AT FGF receptor activating protein 1 rn
RAT230_2:1379667_AT FGF receptor activating protein 1 rn
RG-U34B:RC_AA924867_AT FGF receptor activating protein 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA84731 Hypothetical protein T04A8.12 [Caenorhabditis elegans] ref|NP_497966.1| T04A8.12 [Caenorhabditis elegans] 1.0E-138
blast CAA84731 Hypothetical protein T04A8.12 [Caenorhabditis elegans] ref|NP_497966.1| T04A8.12 [Caenorhabditis elegans] 1.0E-129
blast CAE71149 Hypothetical protein CBG18005 [Caenorhabditis briggsae] 1.0E-115
blast CAE71149 Hypothetical protein CBG18005 [Caenorhabditis briggsae] 1.0E-114
blast BAE37322.1 unnamed protein product [Mus musculus] 7.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497966.1 6 30-52,87-109,122-144,159-177,197-215,225-247
T04A8.12 6 30-52,87-109,122-144,159-177,197-215,225-247
SNAP00000041100 5 15-37,109-131,144-162,182-200,210-232
GENEFINDER00000041113 5 15-37,109-131,144-162,182-200,210-232
Sequence
Target Sequence 
>C. ELEGANS:193884_AT
agctgcagtctcaacgtatacacctgaaaagtatatttggagaattctaatcggattgca
tattggaccccgattggtagttgcaattgcattcagaaactttttattgggatctcctct
acgacctcttactggacataaaaggcttcggtttttgtgcaatttggcttgctttctcaa
tcttctagagaatttcttccttctggcattaacatcgatttcatcaagtgaagatcactc
tcttcatgctaaatgcttcggtggatttgctatttgttcgattatatacatgcttttgag
cacatggcttttcaatgaaactggaaggagaactgcaacaaatttgggtcaacgttcgca
cgaatataaaatcctgggagctgctattttcgttctatgctttttccttggagcatatct
ttattggaggcataacacgtactgcgagccaggaatttacacgctcttcgcacttgtcga
gtactctgccgttttatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGCAGTCTCAACGTATACACCT 527 81 231 Antisense
GATTGCATATTGGACCCCGATTGGT 473 433 284 Antisense
TTTATTGGGATCTCCTCTACGACCT 139 667 333 Antisense
TCTACGACCTCTTACTGGACATAAA 182 615 348 Antisense
AATTTGGCTTGCTTTCTCAATCTTC 244 175 391 Antisense
TTCTTCCTTCTGGCATTAACATCGA 120 689 424 Antisense
AGATCACTCTCTTCATGCTAAATGC 3 67 462 Antisense
GGAGCTGCTATTTTCGTTCTATGCT 661 521 607 Antisense
GAGGCATAACACGTACTGCGAGCCA 424 405 657 Antisense
CTCTTCGCACTTGTCGAGTACTCTG 52 231 694 Antisense
TCGAGTACTCTGCCGTTTTATCAAA 296 603 707 Antisense
Sequence Source Affymetrix Proprietary Database