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[193882_at]

Description C46F11.2 /REP_DB=WormBase Gene ID /WP=CE17558 /TR=Q93379 /GB=CAB03763.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=pyridine nucleotide-disulphide oxidoreductases class-I
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 05      6grp_total > 07      4grp_total > 59      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4311
1 2 3 4 range
A 5829.4
(1)
P 		6286
(1.8)
P 		6996.8
(3)
P 		3469.1
(-3)
P 		3528
B 6379.4
(1.4)
P 		6009.6
(0.8)
P 		7410.7
(3)
P 		3544.3
(-3)
P 		3866
C 5497.7
(1)
P 		5950.5
(1.8)
P 		6688
(3)
P 		3099.4
(-3)
P 		3589
avr 5902.2
(1.1) 		6082
(1.4) 		7031.8
(3) 		3370.9
(-3) 		3661

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4102
1 2 3 4 5 6 range
A 8398.7
(3)
P 		5547
(-1.2)
P 		6431.3
(0.1)
P 		5071.4
(-1.9)
P 		5264.8
(-1.7)
P 		4365.5
(-3)
P 		4033
B 7629.4
(3)
P 		5951.8
(-1)
P 		6620.2
(0.6)
P 		6431.6
(0.2)
P 		5082.1
(-3)
P 		5387.3
(-2.3)
P 		2547
C 5840.2
(2)
P 		5899.6
(2.2)
P 		6133.9
(3)
P 		5252.2
(0.1)
P 		4296.9
(-3)
P 		5103.2
(-0.4)
P 		1837
avr 7289.4
(3) 		5799.5
(-0.7) 		6395.1
(0.8) 		5585.1
(-1.2) 		4881.3
(-3) 		4952
(-2.8) 		2408
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1823
1 2 3 4 range
A 2122.5
(3)
P 		1364.5
(0.2)
P 		1829.1
(1.9)
P 		507.8
(-3)
P 		1615
B 2034.4
(3)
P 		1484.2
(0.4)
P 		1717.2
(1.5)
P 		755.3
(-3)
P 		1279
C 1819.9
(1.3)
P 		1710.8
(0.9)
P 		2331
(3)
P 		522.6
(-3)
P 		1808
avr 1992.3
(3) 		1519.8
(1) 		1959.1
(2.9) 		595.2
(-3) 		1397

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1599
1 2 3 4 5 6 range
A 1548.2
(0.2)
P 		1972.8
(3)
P 		1400.6
(-0.8)
P 		1286.2
(-1.5)
P 		1588.7
(0.5)
P 		1062.9
(-3)
P 		910
B 2654.7
(3)
P 		1981.1
(-0.9)
P 		1607.6
(-3)
P 		1703.5
(-2.5)
P 		2064.8
(-0.4)
P 		2008.9
(-0.7)
P 		1047
C 2164.7
(3)
P 		1800.1
(1)
P 		1561.2
(-0.3)
P 		1056.2
(-3)
P 		1390.4
(-1.2)
P 		1708.3
(0.5)
P 		1109
avr 2122.5
(3) 		1918
(1.4) 		1523.1
(-1.6) 		1348.6
(-3) 		1681.3
(-0.4) 		1593.4
(-1.1) 		774
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7298
Sequence Type Exemplar sequence
Representative Public ID C46F11.2 NCBI
Target Description C46F11.2 /REP_DB=WormBase Gene ID /WP=CE17558 /TR=Q93379 /GB=CAB03763.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=pyridine nucleotide-disulphide oxidoreductases class-I
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026049(11), NM_001026050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026049 NCBI Caenorhabditis elegans C46F11.2a (C46F11.2) mRNA, complete cds. 11/11 None
NM_001026050 NCBI Caenorhabditis elegans C46F11.2b (C46F11.2) mRNA, complete cds. 11/11 None
SNAP00000037471 ENSEMBL cdna:SNAP chromosome:CEL140:III:3651314:3665016:1 11/11 None
GENEFINDER00000037479 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3651314:3652902:1 11/11 None
C46F11.2a ENSEMBL cdna:known chromosome:CEL140:III:3650884:3652923:1 gene:C46F11.2 11/11 None
C46F11.2b.2 ENSEMBL cdna:known chromosome:CEL140:III:3651159:3652854:1 gene:C46F11.2 11/11 None
C46F11.2b.3 ENSEMBL cdna:known chromosome:CEL140:III:3651305:3652854:1 gene:C46F11.2 11/11 None
C46F11.2b.1 ENSEMBL cdna:known chromosome:CEL140:III:3651307:3652854:1 gene:C46F11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3650953-3652854(+) 99.65 100.0
Public Domain and Genome References
Ensembl C46F11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03763 Hypothetical protein C46F11.2a [Caenorhabditis elegans] ref|NP_001021220.1| C46F11.2a [Caenorhabditis elegans] 0.0
blast CAD88214 Hypothetical protein C46F11.2b [Caenorhabditis elegans] ref|NP_001021221.1| C46F11.2b [Caenorhabditis elegans] 0.0
blast CAE64942 Hypothetical protein CBG09773 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004099 EMBL-EBI Pyridine nucleotide-disulphide oxidoreductase dimerisation domain 3.3E-50
Pfam IPR001327 EMBL-EBI FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.2E-73
Pfam IPR004099 EMBL-EBI Pyridine nucleotide-disulphide oxidoreductase dimerisation domain 3.3E-50
Pfam IPR001327 EMBL-EBI FAD-dependent pyridine nucleotide-disulphide oxidoreductase 8.2E-73
Sequence
Target Sequence 
>C. ELEGANS:193882_AT
gtaccagaacacatctgctccaggaattttgtctgttggagatgatactggaaagttcct
tctcacaccagtcgcaattgctgccggacgtcgactctctcatcgtctgttcaatggtga
aactgataataagttgacttatgagaacattgccacagtggttttcagtcatccacttat
tggaaccgtcggactcacggaagctgaggccgttgaaaagtacggaaaagacgaagttac
cctctacaaatctcgcttcaatccaatgttgttcgcagtcaccaagcacaaggagaaggc
cgcgatgaagcttgtttgtgtcggaaaagacgagaaagtcgtcggagtccatgttttcgg
agttggatccgatgagatgctccaaggattcgctgttgctgtcacaatgggcgccacgaa
gaaacaattcgatcagactgtcgcgattcacccaacttctgccgaagagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCAGAACACATCTGCTCCAGGA 133 457 930 Antisense
ACTCTCTCATCGTCTGTTCAATGGT 194 101 1023 Antisense
TTGCCACAGTGGTTTTCAGTCATCC 406 697 1079 Antisense
CTACAAATCTCGCTTCAATCCAATG 427 225 1173 Antisense
TGTTGTTCGCAGTCACCAAGCACAA 379 563 1196 Antisense
GGCCGCGATGAAGCTTGTTTGTGTC 36 543 1227 Antisense
GTCGTCGGAGTCCATGTTTTCGGAG 157 473 1267 Antisense
GATGCTCCAAGGATTCGCTGTTGCT 79 415 1305 Antisense
CGCTGTTGCTGTCACAATGGGCGCC 480 253 1320 Antisense
TCGATCAGACTGTCGCGATTCACCC 701 601 1358 Antisense
TTCACCCAACTTCTGCCGAAGAGCT 524 687 1376 Antisense
Sequence Source Affymetrix Proprietary Database