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[193881_at] Lectin C-type domain short and long forms (2 domains)

Description Y102A5B.1 /REP_DB=WormBase Gene ID /WP=CE19285 /TR=O45529 /GB=CAB04422.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_total > 09      4grp_total > 04      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 53.9
(0.1)
P 		11.5
(-3)
A 		51.1
(-0.1)
A 		93.4
(3)
A 		82
B 31.7
(-2.6)
M 		63.3
(3)
P 		29.5
(-3)
A 		47.2
(0.1)
P 		34
C 49.7
(-0.3)
A 		43.8
(-1.4)
A 		34.5
(-3)
A 		68.5
(3)
P 		34
avr 45.1
(-1.7) 		39.5
(-2.8) 		38.4
(-3) 		69.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 62
(2.9)
P 		17.3
(-3)
A 		47.1
(0.9)
P 		62.7
(3)
M 		34.6
(-0.7)
A 		46.2
(0.8)
A 		45
B 41.9
(1.2)
P 		50
(3)
P 		36.2
(0)
A 		30
(-1.3)
A 		22.3
(-3)
A 		30.1
(-1.3)
A 		28
C 53.1
(1.3)
A 		32.2
(-0.7)
P 		7.8
(-3)
A 		71.7
(3)
P 		22.4
(-1.6)
A 		41.6
(0.2)
A 		64
avr 52.3
(2.5) 		33.2
(-1.6) 		30.4
(-2.2) 		54.8
(3) 		26.4
(-3) 		39.3
(-0.3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.6
(3)
P 		2.5
(-3)
A 		13.4
(0.8)
A 		13.7
(0.9)
A 		17
B 10.1
(-0.8)
M 		15.6
(3)
P 		6.8
(-3)
A 		10.1
(-0.8)
P 		9
C 16.5
(3)
A 		12.6
(-1.8)
A 		12
(-2.5)
A 		11.6
(-3)
P 		5
avr 15.4
(3) 		10.2
(-3) 		10.7
(-2.4) 		11.8
(-1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11.4
(0.2)
P 		6.1
(-3)
A 		10.3
(-0.4)
P 		15.9
(3)
M 		10.4
(-0.4)
A 		11.3
(0.2)
A 		10
B 14.6
(1.6)
P 		16.6
(3)
P 		8.8
(-2.4)
A 		8
(-3)
A 		9
(-2.3)
A 		11.2
(-0.8)
A 		9
C 19.7
(3)
A 		9.8
(-0.4)
P 		2
(-3)
A 		14.4
(1.2)
P 		7.3
(-1.2)
A 		13.9
(1)
A 		18
avr 15.2
(3) 		10.8
(-0.2) 		7
(-3) 		12.8
(1.2) 		8.9
(-1.6) 		12.1
(0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12908
Sequence Type Exemplar sequence
Representative Public ID Y102A5B.1 NCBI
Target Description Y102A5B.1 /REP_DB=WormBase Gene ID /WP=CE19285 /TR=O45529 /GB=CAB04422.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074856 NCBI Caenorhabditis elegans C-type LECtin family member (clec-27) (clec-27) mRNA, complete cds. 11/11 None
SNAP00000001310 ENSEMBL cdna:SNAP chromosome:CEL140:V:16857478:16858733:1 11/11 None
GENEFINDER00000001325 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16857356:16858733:1 11/11 None
Y102A5B.1 ENSEMBL cdna:known chromosome:CEL140:V:16857227:16858733:1 gene:Y102A5B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16857226-16858733(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-27
Ensembl Y102A5B.1
Entrez Gene 190826 Entrez gene
SwissProt O45529 EMBL-EBI
WormBase CE35640 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04422 Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] emb|CAA19439.2| Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] ref|NP_507257.2| C-type LECtin family member (clec-27) [Caenorhabditis elegans] 0.0
blast CAB04422 Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] emb|CAA19439.2| Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] ref|NP_507257.2| C-type LECtin family member (clec-27) [Caenorhabditis elegans] 1.0E-170
blast CAB04422 Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] emb|CAA19439.2| Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] ref|NP_507257.2| C-type LECtin family member (clec-27) [Caenorhabditis elegans] 1.0E-157
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 1.0E-122
blast CAB04827 Hypothetical protein T25E12.9 [Caenorhabditis elegans] ref|NP_507235.2| C-type LECtin family member (clec-29) [Caenorhabditis elegans] 1.0E-107
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 1.0E-105
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.5E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 1.5E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 1.5E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507257.2 1 35-57
Y102A5B.1 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:193881_AT
tcatgggcagtttctgtgcacctgggatgttgatagcggggacatctcagcttacaataa
ctttgccaagacttatccaaataacgtgactggaggttgcatttactatatgactaccgg
atcgcaagccgggcaatggacaaacggagcgtgtaataaggcattgagttttgtgtgtga
gctaccagcaactattcacgatgaaacatgtaaatacaactacaacaattattgctacat
cacaaacgatcaactaaaaatctccagcgatgcacagcaaatttgcacatcatctggttc
caacttggtgtcaattcactctgcaaatgaaaatcgattcctaacgacaatctattctcc
gccggttttagttggcggagtcgcattttcaagcaatttgattctatggtatgatggaac
gccatcgacttttaacaatataaaatcgataaccaatggaaattgccttttcatcaatga
tacccacggcggctggtatggtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGGGCAGTTTCTGTGCACCTGG 689 621 489 Antisense
GTGCACCTGGGATGTTGATAGCGGG 620 479 504 Antisense
GATAGCGGGGACATCTCAGCTTACA 230 419 520 Antisense
TGACTACCGGATCGCAAGCCGGGCA 593 569 599 Antisense
AATCTCCAGCGATGCACAGCAAATT 59 171 747 Antisense
ATTTGCACATCATCTGGTTCCAACT 623 17 769 Antisense
ACAATCTATTCTCCGCCGGTTTTAG 500 113 835 Antisense
GCGGAGTCGCATTTTCAAGCAATTT 484 293 863 Antisense
GAACGCCATCGACTTTTAACAATAT 302 347 905 Antisense
GCCTTTTCATCAATGATACCCACGG 293 279 953 Antisense
TACCCACGGCGGCTGGTATGGTTTC 671 595 969 Antisense
Sequence Source Affymetrix Proprietary Database