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[193880_at] ubiquinol-cytochrome c reductase complexn 11 KD protein

Description T27E9.2 /REP_DB=WormBase Gene ID /WP=CE14265 /TR=O45864 /GB=CAB04873.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ubiquinol-cytochrome c reductase complexn 11 KD protein
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 06      6grp_total > 31      4grp_total > 58      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5892
1 2 3 4 range
A 8347
(0.3)
P 		7832
(-0.2)
P 		10918.5
(3)
P 		5131.3
(-3)
P 		5787
B 6881.2
(-2.1)
P 		9555.5
(2.2)
P 		10066
(3)
P 		6329.6
(-3)
P 		3736
C 7947.7
(0.2)
P 		9805.9
(2.2)
P 		10519.6
(3)
P 		5026.8
(-3)
P 		5493
avr 7725.3
(-0.3) 		9064.5
(1.3) 		10501.4
(3) 		5495.9
(-3) 		5006

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4426
1 2 3 4 5 6 range
A 7222
(-1.5)
P 		8975.5
(0.9)
P 		10507.7
(3)
P 		9432.7
(1.5)
P 		6388.6
(-2.6)
P 		6082.2
(-3)
P 		4426
B 8039.1
(-0.2)
P 		9327
(2.2)
P 		9733.6
(3)
P 		8318.2
(0.3)
P 		7037.9
(-2.1)
P 		6559.8
(-3)
P 		3174
C 9235
(1.6)
P 		8828.5
(0.9)
P 		10021.7
(3)
P 		7805.7
(-0.9)
P 		7194.4
(-2)
P 		6611.7
(-3)
P 		3410
avr 8165.4
(-0.1) 		9043.7
(1.3) 		10087.7
(3) 		8518.9
(0.4) 		6873.6
(-2.3) 		6417.9
(-3) 		3670
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2915
1 2 3 4 range
A 3039.1
(3)
P 		1700.1
(-0.5)
P 		2854.3
(2.5)
P 		751.1
(-3)
P 		2288
B 2194.4
(2)
P 		2360
(3)
P 		2332.5
(2.8)
P 		1348.8
(-3)
P 		1011
C 2630.9
(0.8)
P 		2819.3
(1.2)
P 		3666.4
(3)
P 		847.6
(-3)
P 		2819
avr 2621.5
(2) 		2293.1
(1) 		2951.1
(3) 		982.5
(-3) 		1969

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2092
1 2 3 4 5 6 range
A 1331.3
(-3)
P 		3192.1
(3)
P 		2288.3
(0.1)
P 		2392.4
(0.4)
P 		1927.8
(-1.1)
P 		1480.8
(-2.5)
P 		1861
B 2797.2
(1)
P 		3104.6
(3)
P 		2363.6
(-1.9)
P 		2203.2
(-3)
P 		2859.4
(1.4)
P 		2446.1
(-1.4)
P 		901
C 3423
(3)
P 		2693.8
(0.6)
P 		2550.7
(0.2)
P 		1569.7
(-3)
P 		2328
(-0.5)
P 		2213.3
(-0.9)
P 		1853
avr 2517.2
(-0) 		2996.8
(3) 		2400.9
(-0.8) 		2055.1
(-2.9) 		2371.7
(-0.9) 		2046.7
(-3) 		950
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6437
Sequence Type Exemplar sequence
Representative Public ID T27E9.2 NCBI
Target Description T27E9.2 /REP_DB=WormBase Gene ID /WP=CE14265 /TR=O45864 /GB=CAB04873.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ubiquinol-cytochrome c reductase complexn 11 KD protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067380 NCBI Caenorhabditis elegans T27E9.2 (T27E9.2) mRNA, complete cds. 11/11 None
SNAP00000014263 ENSEMBL cdna:SNAP chromosome:CEL140:III:13461873:13462100:-1 11/11 None
GENEFINDER00000014279 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13461873:13462100:-1 11/11 None
T27E9.2.2 ENSEMBL cdna:known chromosome:CEL140:III:13460378:13462100:-1 gene:T27E9.2 11/11 None
T27E9.2.1 ENSEMBL cdna:known chromosome:CEL140:III:13460378:13462100:-1 gene:T27E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13461868-13462096(-) 100.0 100.0
Public Domain and Genome References
Gene Title ubiquinol-cytochrome c reductase complexn 11 KD protein
Ensembl T27E9.2
Entrez Gene 176772 Entrez gene
SwissProt O45864 EMBL-EBI
WormBase CE14265 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6122 mitochondrial electron transport, ubiquinol to cytochrome c inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8121 ubiquinol-cytochrome-c reductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04873 Hypothetical protein T27E9.2 [Caenorhabditis elegans] ref|NP_499781.1| T27E9.2 [Caenorhabditis elegans] 5.0E-39
blast CAE73689 Hypothetical protein CBG21200 [Caenorhabditis briggsae] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR003422 EMBL-EBI Ubiquinol-cytochrome C reductase hinge protein 4.7E-46
Sequence
Target Sequence 
>C. ELEGANS:193880_AT
ggaagagccactcgaggctgacgtcgatcaacttactcaataccgtgagcgatgtgccga
ccatgtcaccgaattcaagagtattctcgacgagtgcaacgatcgtgtcaactctcgttc
taacactgaggagacctgccatcaggagatggctgactacgttcaccatttggatcactg
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGAGCCACTCGAGGCTGACGTC 85 529 27 Antisense
GAGGCTGACGTCGATCAACTTACTC 76 407 40 Antisense
GTCGATCAACTTACTCAATACCGTG 664 473 49 Antisense
CAATACCGTGAGCGATGTGCCGACC 244 179 64 Antisense
TGCCGACCATGTCACCGAATTCAAG 278 583 81 Antisense
GAGTATTCTCGACGAGTGCAACGAT 11 399 105 Antisense
AGTGCAACGATCGTGTCAACTCTCG 96 61 119 Antisense
GTCAACTCTCGTTCTAACACTGAGG 143 465 133 Antisense
AACACTGAGGAGACCTGCCATCAGG 677 131 148 Antisense
AGGAGATGGCTGACTACGTTCACCA 479 55 170 Antisense
CTACGTTCACCATTTGGATCACTGT 689 225 183 Antisense
Sequence Source Affymetrix Proprietary Database