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[193879_s_at] M. musculus T-cell activation protein TCA3

Description F52D2.4 /REP_DB=WormBase Gene ID /WP=CE23757 /GEN=gei-12 /TR=Q9TXM1 /GB=AAC78155.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=M. musculus T-cell activation protein TCA3
Cluster 6grp_total > 79      4grp_total > 35      6grp_cgc > 48      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 18.6
(-0.3)
A 		23.1
(3)
A 		15
(-3)
A 		17
(-1.5)
A 		8
B 13.8
(-1.5)
A 		36.1
(3)
A 		6.4
(-3)
A 		28.8
(1.5)
A 		30
C 17.8
(0.1)
A 		24.4
(3)
A 		10.6
(-3)
A 		20.7
(1.4)
A 		14
avr 16.7
(-0.9) 		27.9
(3) 		10.7
(-3) 		22.2
(1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 55.8
(-3)
A 		60.9
(-2.9)
A 		73.9
(-2.7)
A 		79.9
(-2.5)
A 		137.8
(-1.4)
A 		366.8
(3)
P 		311
B 54.6
(-3)
A 		169.2
(0.8)
A 		77.7
(-2.2)
A 		68.7
(-2.5)
A 		61.4
(-2.8)
A 		235.9
(3)
P 		181
C 33.9
(-2.8)
A 		134.6
(-0.5)
A 		70.8
(-1.9)
A 		23
(-3)
A 		142.5
(-0.3)
A 		291.3
(3)
P 		268
avr 48.1
(-3) 		121.6
(-1.2) 		74.1
(-2.4) 		57.2
(-2.8) 		113.9
(-1.4) 		298
(3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.8
(3)
A 		5
(0.5)
A 		3.9
(-1)
A 		2.5
(-3)
A 		4
B 4.4
(-0.6)
A 		8.9
(3)
A 		1.5
(-3)
A 		6.1
(0.7)
A 		7
C 5.9
(1.1)
A 		7
(3)
A 		3.7
(-2.7)
A 		3.5
(-3)
A 		4
avr 5.7
(1.1) 		7
(3) 		3
(-3) 		4
(-1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 10.3
(-3)
A 		21.7
(-2.1)
A 		16.1
(-2.6)
A 		20.3
(-2.2)
A 		41.6
(-0.6)
A 		89.3
(3)
P 		79
B 19
(-2.9)
A 		56.3
(0.3)
A 		18.9
(-2.9)
A 		18.2
(-3)
A 		24.9
(-2.4)
A 		88
(3)
P 		70
C 12.6
(-2.5)
A 		41.1
(-0.6)
A 		18
(-2.1)
A 		4.6
(-3)
A 		46.1
(-0.3)
A 		97.5
(3)
P 		93
avr 14
(-3) 		39.7
(-1) 		17.7
(-2.7) 		14.4
(-3) 		37.5
(-1.2) 		91.6
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193879_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18058
Sequence Type Exemplar sequence
Representative Public ID F52D2.4 NCBI
Target Description F52D2.4 /REP_DB=WormBase Gene ID /WP=CE23757 /GEN=gei-12 /TR=Q9TXM1 /GB=AAC78155.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=M. musculus T-cell activation protein TCA3
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075966 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-12) (gei-12) mRNA, complete cds. 11/11 A 
F52D2.4 ENSEMBL cdna:known chromosome:CEL140:X:1986518:1989599:-1 gene:F52D2.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1986646-1989599(-) 100.0 100.0
Public Domain and Genome References
Gene Title M. musculus T-cell activation protein TCA3
Gene Symbol gei-12
Ensembl F52D2.4
Entrez Gene 180510 Entrez gene
SwissProt Q9TXM1 EMBL-EBI
WormBase CE23757 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5623 cell inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC78155 Gex interacting protein protein 12 [Caenorhabditis elegans] ref|NP_508367.1| GEX Interacting protein family member (gei-12) [Caenorhabditis elegans] 0.0
blast NP_508310 C36C9.1 [Caenorhabditis elegans] gb|AAC67424.1| Hypothetical protein C36C9.1 [Caenorhabditis elegans] 0.0
blast AAC78158 Hypothetical protein F52D2.6 [Caenorhabditis elegans] ref|NP_508365.1| F52D2.6 [Caenorhabditis elegans] 2.0E-87
Sequence
Target Sequence 
>C. ELEGANS:193879_S_AT
ggctccacttccttgtgaatcagccgatcggatcgaatatccttctcaagattgcactca
agatccagcttcaacctcgccaccacctcgcatttctgaaagcttgacagcattcctgga
agctcagcaagactttaacgactacattgatactaactacaaagaaaagacacaactcct
gaaagtgaatttgaatattcacgggatgtcacctgaaagatggctgtacttgaattattt
ttgcaccgagacaattccaagattggatggtccttatgccgatgatccaagagttccacc
tgtgcgaaatatgttcagaaaatggttcctccgttttgctgaagcctgcttaggaaatcc
tcaccagcttgcagttatgcaagagattgctgccacgtttgttcaggctcggctggacga
tacgagcagctccacagactccaccaatatgctctacatgttgtggaaggagtgtatcgg
acagaagaatatcatcgcaattgctgatgcgtgtttacttgcacatcttcggaaatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCCACTTCCTTGTGAATCAGCC 124 539 1992 Antisense
GCCGATCGGATCGAATATCCTTCTC 173 285 2014 Antisense
ATATCCTTCTCAAGATTGCACTCAA 354 21 2028 Antisense
TTGCACTCAAGATCCAGCTTCAACC 33 705 2043 Antisense
GAAGCTCAGCAAGACTTTAACGACT 361 341 2110 Antisense
CAGAAAATGGTTCCTCCGTTTTGCT 667 203 2307 Antisense
AAATCCTCACCAGCTTGCAGTTATG 253 117 2346 Antisense
AAGAGATTGCTGCCACGTTTGTTCA 68 155 2372 Antisense
TTTGTTCAGGCTCGGCTGGACGATA 708 665 2389 Antisense
ATTGCTGATGCGTGTTTACTTGCAC 124 7 2491 Antisense
TTACTTGCACATCTTCGGAAATCGG 699 677 2506 Antisense
Sequence Source Affymetrix Proprietary Database