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[193878_s_at] clathrin coat assembly protein complex 1 medium chain

Description F55A12.7 /REP_DB=WormBase Gene ID /WP=CE11129 /TR=O01755 /GB=AAB54125.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=clathrin coat assembly protein complex 1 medium chain
Cluster 6grp_total > 09      4grp_total > 01      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 309.4
(0)
A 		341.2
(2.6)
A 		272.5
(-3)
A 		346
(3)
A 		74
B 367.2
(0)
A 		226.9
(-3)
A 		346.9
(-0.4)
A 		503.6
(3)
P 		277
C 332.3
(-3)
A 		336.9
(-2.8)
A 		431.3
(0.8)
A 		487.7
(3)
P 		155
avr 336.3
(-1.6) 		301.7
(-3) 		350.2
(-1) 		445.8
(3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 370.4
(3)
P 		286.4
(-1.1)
P 		312
(0.1)
A 		369.2
(2.9)
P 		247.8
(-3)
A 		263.7
(-2.2)
P 		123
B 361.3
(3)
A 		355.5
(2.7)
M 		227
(-3)
A 		259.2
(-1.6)
A 		325.3
(1.4)
M 		246.5
(-2.1)
P 		134
C 399.3
(2.9)
P 		280
(-2.5)
A 		314.6
(-1)
M 		401.2
(3)
P 		269.9
(-3)
A 		328.2
(-0.3)
P 		131
avr 377
(3) 		307.3
(-1.3) 		284.5
(-2.7) 		343.2
(0.9) 		281
(-2.9) 		279.5
(-3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 112.6
(3)
A 		74.1
(-0.7)
A 		71.2
(-1)
A 		50.7
(-3)
A 		62
B 117.1
(3)
A 		56
(-3)
A 		80.4
(-0.6)
A 		107.3
(2)
P 		61
C 110
(-0.6)
A 		96.9
(-1.7)
A 		150.3
(3)
A 		82.2
(-3)
P 		68
avr 113.2
(3) 		75.7
(-3) 		100.6
(1) 		80.1
(-2.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 68.3
(-2.3)
P 		101.9
(3)
P 		67.9
(-2.4)
A 		93.6
(1.7)
P 		74.8
(-1.3)
A 		64.2
(-3)
P 		38
B 125.7
(2.5)
A 		118.3
(1.9)
M 		55.1
(-3)
A 		68.6
(-1.9)
A 		132.2
(3)
M 		91.9
(-0.1)
P 		77
C 148
(3)
P 		85.4
(-2.5)
A 		80.1
(-3)
M 		80.7
(-2.9)
P 		87.3
(-2.4)
A 		109.9
(-0.4)
P 		68
avr 114
(3) 		101.9
(1.4) 		67.7
(-3) 		81
(-1.3) 		98.1
(0.9) 		88.7
(-0.3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193878_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1180
Sequence Type Exemplar sequence
Representative Public ID F55A12.7 NCBI
Target Description F55A12.7 /REP_DB=WormBase Gene ID /WP=CE11129 /TR=O01755 /GB=AAB54125.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=clathrin coat assembly protein complex 1 medium chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059171
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F55A12.7 ENSEMBL cdna:known chromosome:CEL140:I:5342183:5344727:-1 gene:F55A12.7 None
NM_059171 NCBI Caenorhabditis elegans AdaPtin, Mu/medium chain (clathrin associated complex) family member (apm-1) (apm-1) mRNA, complete cds. None
SNAP00000029039 ENSEMBL cdna:SNAP chromosome:CEL140:I:5342484:5344707:-1 None
GENEFINDER00000029062 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5342484:5345507:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5342483-5344707(-) 100.0 100.0
Public Domain and Genome References
Gene Title clathrin coat assembly protein complex 1 medium chain
Gene Symbol apm-1
Ensembl F55A12.7
Entrez Gene 172180 Entrez gene
SwissProt O01755 EMBL-EBI
WormBase CE30145 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262787_AT clathrin adaptor complexes medium subunit family protein at
ATGENOME1:18500_AT clathrin adaptor complexes medium subunit family protein at
CANINE_2:CFAAFFX.27171.1.S1_S_AT similar to Adaptor-related protein complex 1, mu 2 subunit (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 medium chain 2) (AP-mu chain fa... cfa
HG-U133_PLUS_2:218261_AT adaptor-related protein complex 1, mu 2 subunit hs
HG-U133A:218261_AT adaptor-related protein complex 1, mu 2 subunit hs
HG-U133A_2:218261_AT adaptor-related protein complex 1, mu 2 subunit hs
HU35KSUBB:RC_W92449_AT adaptor-related protein complex 1, mu 2 subunit hs
U133_X3P:G9506796_3P_S_AT adaptor-related protein complex 1, mu 2 subunit hs
HG-U95B:45507_F_AT adaptor-related protein complex 1, mu 2 subunit hs
HG-U133A_2:65517_AT adaptor-related protein complex 1, mu 2 subunit hs
HG-FOCUS:65517_AT adaptor-related protein complex 1, mu 2 subunit hs
HG-U133_PLUS_2:65517_AT adaptor-related protein complex 1, mu 2 subunit hs
HG-U133A:65517_AT adaptor-related protein complex 1, mu 2 subunit hs
HG-U95C:65517_AT adaptor-related protein complex 1, mu 2 subunit hs
MU11KSUBB:MSA.13364.0_S_AT adaptor protein complex AP-1, mu 2 subunit mm
MG-U74BV2:106058_AT adaptor protein complex AP-1, mu 2 subunit mm
MG-U74CV2:135578_AT adaptor protein complex AP-1, mu 2 subunit mm
MOE430A:1460190_AT adaptor protein complex AP-1, mu 2 subunit mm
MOUSE430A_2:1460190_AT adaptor protein complex AP-1, mu 2 subunit mm
MOUSE430_2:1460190_AT adaptor protein complex AP-1, mu 2 subunit mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30125 clathrin vesicle coat inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54125 Adaptin, mu/medium chain (clathrin associated complex) protein 1 [Caenorhabditis elegans] ref|NP_491572.2| AdaPtin, Mu/medium chain (clathrin associated complex) family member (apm-1) [Caenorhabditis elegans] 0.0
blast CAE66937 Hypothetical protein CBG12329 [Caenorhabditis briggsae] 0.0
blast XP_865989 PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit isoform 14 [Canis familiaris] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193878_S_AT
tgatttgggttgaggctgcagttgagagacatgcacattcaagagttgaatatatggtta
aagcgaaatctcaattcaaacgtcaatctgttgccaatcatgtcgaagttattatccctg
ttccatccgacgtcagtgctccaaaatttaaaactggagcaggtacagcaaaatatgttc
cagagcttaatgctattgtttggagtattcgaagcttcccaggtgagcatcaagtcagaa
atattttcaaatatcagctcaatagaaatgttatgcatatttgttggaaaactgttcaat
acagaaaaaaaattctgtccgaaattttttttttctatattatctttacctttggaggcc
gtgaatatataatgagatcttcgttcatgctcccatcaattggctccgaagagctggaag
gccgtccgccaatcaatgttaaatttgaaattccttactacacaacttccggactacaag
ttcgatatttaaaaatcatagagaaatctggatatcaagcacttccatgggtacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTTGGGTTGAGGCTGCAGTTGA 682 563 848 Antisense
GTCAATCTGTTGCCAATCATGTCGA 461 463 929 Antisense
GTCGAAGTTATTATCCCTGTTCCAT 271 475 949 Antisense
TGGAGTATTCGAAGCTTCCCAGGTG 493 547 1048 Antisense
GCTTCCCAGGTGAGCATCAAGTCAG 337 305 1061 Antisense
TTATCTTTACCTTTGGAGGCCGTGA 90 671 1187 Antisense
CTCCCATCAATTGGCTCCGAAGAGC 91 235 1237 Antisense
TCCGAAGAGCTGGAAGGCCGTCCGC 382 595 1252 Antisense
GCCGTCCGCCAATCAATGTTAAATT 140 285 1268 Antisense
TGAAATTCCTTACTACACAACTTCC 644 571 1293 Antisense
GATATCAAGCACTTCCATGGGTACG 531 425 1358 Antisense
Sequence Source Affymetrix Proprietary Database