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[193877_at] Lectin C-type domain short and long forms (2 domains)

Description T25E12.10 /REP_DB=WormBase Gene ID /WP=CE16471 /TR=O45824 /GB=CAB04828.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_total > 53      4grp_total > 35      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.2
(-1.9)
A 		10.9
(3)
A 		5.2
(-3)
A 		6.7
(-1.4)
A 		6
B 4.4
(-0.8)
A 		6
(3)
A 		3.5
(-3)
A 		4.3
(-1.1)
A 		3
C 3.5
(-3)
A 		4.6
(-1.9)
A 		4.4
(-2.1)
A 		9.6
(3)
A 		6
avr 4.7
(-2.4) 		7.2
(3) 		4.4
(-3) 		6.9
(2.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 4.8
(-2.3)
A 		10.8
(1.2)
A 		14
(3)
A 		11.4
(1.5)
A 		6.4
(-1.3)
A 		3.5
(-3)
A 		11
B 3.4
(-2.9)
A 		4.9
(-2.1)
A 		15.2
(3)
A 		13.5
(2.2)
A 		4.7
(-2.2)
A 		3.1
(-3)
A 		12
C 3.2
(-2.9)
A 		5.3
(-2.7)
A 		60.6
(3)
A 		8.7
(-2.3)
A 		4.1
(-2.8)
A 		2.1
(-3)
A 		59
avr 3.8
(-2.8) 		7
(-2.1) 		29.9
(3) 		11.2
(-1.2) 		5.1
(-2.5) 		2.9
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.3
(2.6)
A 		2.4
(3)
A 		1.4
(-1.3)
A 		1
(-3)
A 		1
B 1.4
(2.1)
A 		1.5
(3)
A 		0.8
(-3)
A 		0.9
(-2.1)
A 		1
C 1.2
(-3)
A 		1.3
(-1.5)
A 		1.5
(1.5)
A 		1.6
(3)
A 		0
avr 1.6
(1.8) 		1.7
(3) 		1.2
(-3) 		1.2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.8
(3)
A 		3
(1.3)
A 		2.9
(1.1)
A 		1.9
(-0.9)
A 		0.9
(-3)
A 		3
B 1.2
(-3)
A 		1.6
(-2)
A 		3.7
(3)
A 		3.6
(2.8)
A 		1.9
(-1.3)
A 		1.2
(-3)
A 		3
C 1.2
(-2.8)
A 		1.6
(-2.6)
A 		15.4
(3)
A 		1.8
(-2.6)
A 		1.3
(-2.8)
A 		0.7
(-3)
A 		15
avr 1.1
(-2.8) 		2.3
(-1.7) 		7.4
(3) 		2.8
(-1.2) 		1.7
(-2.3) 		0.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13518
Sequence Type Exemplar sequence
Representative Public ID T25E12.10 NCBI
Target Description T25E12.10 /REP_DB=WormBase Gene ID /WP=CE16471 /TR=O45824 /GB=CAB04828.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074832(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074832 NCBI Caenorhabditis elegans C-type LECtin family member (clec-38) (clec-38) mRNA, complete cds. 11/11 None
SNAP00000017066 ENSEMBL cdna:SNAP chromosome:CEL140:V:16736482:16738175:-1 11/11 None
GENEFINDER00000017074 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16736482:16741773:-1 11/11 None
T25E12.10 ENSEMBL cdna:known chromosome:CEL140:V:16736482:16738175:-1 gene:T25E12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16736481-16738175(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-38
Ensembl T25E12.10
Entrez Gene 188900 Entrez gene
SwissProt O45824 EMBL-EBI
WormBase CE16471 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04828 Hypothetical protein T25E12.10 [Caenorhabditis elegans] ref|NP_507233.1| C-type LECtin family member (clec-38) [Caenorhabditis elegans] 0.0
blast CAB04827 Hypothetical protein T25E12.9 [Caenorhabditis elegans] ref|NP_507235.2| C-type LECtin family member (clec-29) [Caenorhabditis elegans] 1.0E-174
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 2.0E-95
blast CAB04825 Hypothetical protein T25E12.7 [Caenorhabditis elegans] ref|NP_507236.2| C-type LECtin family member (clec-39) [Caenorhabditis elegans] 1.0E-94
blast T25277 hypothetical protein T25E12.7 - Caenorhabditis elegans 1.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-6
Pfam IPR001304 EMBL-EBI C-type lectin 4.4E-5
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-6
Pfam IPR001304 EMBL-EBI C-type lectin 4.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507233.1 1 40-62
T25E12.10 1 40-62
SNAP00000017066 1 40-62
GENEFINDER00000017074 2 34-56,391-413
Sequence
Target Sequence 
>C. ELEGANS:193877_AT
tgtggacaggcctggtgtgcaaccaaacggcgcgcacctcgtgtatttgggatgtgaaga
gtggcaccacagctgactataataactttgcggatggatttccaaatgttgtctatggat
attgcatttatttcattgtgactggaaattccgccggacagtgggggagtgagcagtgta
gtcagttgatgaattttgtctgtgaacttccgactacgatccgtgatcccgattgtaaat
ataactataacaagaattgctacatccgattcgatatcaccctcacaattcctcaagctc
aacggttttgtaacgagaaaggcgccgatttagtatcaattcattcggcgaacgaaaatc
gatttattttaacaatttacgatattcacgggcagattctactgggcggattggctcctg
cagtggattttattgtttggctcgatgggtcaccaactacttatagtaatttactgtatt
tttatgatacacggagctgtgtactcatgacagttgcacgtggaggtccttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGACAGGCCTGGTGTGCAACCA 589 553 557 Antisense
CGCGCACCTCGTGTATTTGGGATGT 202 257 587 Antisense
AGAGTGGCACCACAGCTGACTATAA 262 69 614 Antisense
AATTCCGCCGGACAGTGGGGGAGTG 115 1 703 Antisense
GTCTGTGAACTTCCGACTACGATCC 320 471 754 Antisense
ACTACGATCCGTGATCCCGATTGTA 517 101 769 Antisense
TACATCCGATTCGATATCACCCTCA 22 645 817 Antisense
CCTCACAATTCCTCAAGCTCAACGG 672 267 837 Antisense
AGATTCTACTGGGCGGATTGGCTCC 444 65 950 Antisense
GCTCGATGGGTCACCAACTACTTAT 640 297 996 Antisense
GACAGTTGCACGTGGAGGTCCTTAT 195 369 1065 Antisense
Sequence Source Affymetrix Proprietary Database