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[193871_s_at]

Description Y37A1B.3 /REP_DB=WormBase Gene ID /WP=CE19073 /TR=Q9XXG1 /GB=CAA19488.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=PhoX homologous domain, present in p47phox and p40phox.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      6grp_highest_nonorm > 82      6grp_total > 59      4grp_total > 52      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 282.9
(0.9)
P 		348.9
(3)
P 		332
(2.5)
P 		158.6
(-3)
A 		190
B 324.7
(2.9)
P 		327.1
(3)
M 		314.2
(2.6)
P 		139.4
(-3)
A 		188
C 334.7
(2.5)
P 		347.9
(3)
P 		317.2
(1.7)
P 		203
(-3)
A 		145
avr 314.1
(2.1) 		341.3
(3) 		321.1
(2.3) 		167
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 359.2
(1.3)
P 		272.2
(-3)
P 		338.2
(0.3)
P 		326.2
(-0.3)
P 		390
(2.8)
P 		393.4
(3)
P 		121
B 424.1
(3)
P 		321.4
(-3)
P 		352.5
(-1.2)
P 		369.9
(-0.2)
P 		323.6
(-2.9)
P 		414.2
(2.4)
P 		103
C 348.1
(-0.3)
P 		311.1
(-1.4)
P 		259.8
(-3)
P 		342.8
(-0.4)
P 		348.2
(-0.3)
P 		453.5
(3)
P 		194
avr 377.1
(0.8) 		301.6
(-3) 		316.8
(-2.2) 		346.3
(-0.7) 		353.9
(-0.4) 		420.4
(3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 103
(3)
P 		75.7
(0.9)
P 		86.8
(1.8)
P 		23.2
(-3)
A 		80
B 103.5
(3)
P 		80.8
(1.2)
M 		72.8
(0.5)
P 		29.7
(-3)
A 		74
C 110.8
(3)
P 		100
(2.2)
P 		110.5
(3)
P 		34.2
(-3)
A 		77
avr 105.8
(3) 		85.5
(1.4) 		90
(1.8) 		29
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 66.2
(-3)
P 		96.8
(0.6)
P 		73.7
(-2.1)
P 		82.7
(-1.1)
P 		117.7
(3)
P 		95.8
(0.4)
P 		52
B 147.5
(2.4)
P 		107
(-1.1)
P 		85.6
(-3)
P 		98
(-1.9)
P 		131.5
(1)
P 		154.5
(3)
P 		69
C 129
(1.4)
P 		94.9
(-1)
P 		66.1
(-3)
P 		68.9
(-2.8)
P 		112.7
(0.3)
P 		151.8
(3)
P 		86
avr 114.2
(1) 		99.6
(-0.5) 		75.1
(-3) 		83.2
(-2.2) 		120.6
(1.6) 		134
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193871_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9408
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.3 NCBI
Target Description Y37A1B.3 /REP_DB=WormBase Gene ID /WP=CE19073 /TR=Q9XXG1 /GB=CAA19488.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=PhoX homologous domain, present in p47phox and p40phox.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070294(11), NM_070292(11), NM_182290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070294 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-4) (lst-4) mRNA, complete cds. 11/11 A 
NM_070292 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-4) (lst-4) mRNA, complete cds. 11/11 A 
NM_182290 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-4) (lst-4) mRNA, complete cds. 11/11 A 
SNAP00000004227 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14061338:14068439:-1 11/11 None
GENEFINDER00000004234 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14061338:14069819:-1 11/11 None
Y37A1B.2b ENSEMBL cdna:known chromosome:CEL140:IV:14061001:14068513:-1 gene:Y37A1B.2 11/11 A 
Y37A1B.2c ENSEMBL cdna:known chromosome:CEL140:IV:14061338:14069819:-1 gene:Y37A1B.2 11/11 A 
Y37A1B.2d ENSEMBL cdna:known chromosome:CEL140:IV:14061338:14069823:-1 gene:Y37A1B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178361 4 3 NM_070292 193871_s_at (11)
NM_070294 173958_at (11), 185377_at (11), 193871_s_at (11)
NM_182290 193871_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14061266-14063186(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y37A1B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19487 Hypothetical protein Y37A1B.2b [Caenorhabditis elegans] ref|NP_502695.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAD56253 Hypothetical protein Y37A1B.2c [Caenorhabditis elegans] ref|NP_502693.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAD56254 Hypothetical protein Y37A1B.2d [Caenorhabditis elegans] ref|NP_872090.1| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001683 EMBL-EBI Phox-like 5.2E-29
Pfam IPR001452 EMBL-EBI SH3 6.0E-15
Pfam IPR001683 EMBL-EBI Phox-like 5.2E-29
Pfam IPR001683 EMBL-EBI Phox-like 8.2E-29
Pfam IPR001683 EMBL-EBI Phox-like 8.2E-29
Sequence
Target Sequence 
>C. ELEGANS:193871_S_AT
tgaacgattccaacggagcgtcaaaacatcggaagaagcgatgcgtgtgatgcaggagag
aatgaacatgttccagaaggtcttcgctggaccggtaaaacaaaattggcaaaagatggg
aagcgcgttcaagacacttcagcaatcttttgagattgatgagaccgttgccagtcgccg
cctgacagaagctctcgcctacactgcatcagaatatcatgaaattgggcaagtattcga
tgcgcacacgaagaatgacatggaaccagtgcttgagaacctttattcgtataagggaac
agtgcaaaatgtgccggatattattcaagtgcacaagcaagctgttcaaaagttccgtga
cagcgaaggacgtctctcgtcggccgaggctgaaaagatgaagcaaagaatcgatgcgat
gagctacactgtaattgctgaagttcaacatcaaacagcagagaaagtggaggatatgaa
atcgacaatgggcacatatttgaagaaacaagcaatgttttatcaggaagtggcgaccaa
gctgacttcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACGATTCCAACGGAGCGTCAAA 401 573 507 Antisense
GAACATGTTCCAGAAGGTCTTCGCT 536 351 570 Antisense
AGCGCGTTCAAGACACTTCAGCAAT 126 81 628 Antisense
GATTGATGAGACCGTTGCCAGTCGC 559 433 660 Antisense
CTCGCCTACACTGCATCAGAATATC 624 233 700 Antisense
GGGCAAGTATTCGATGCGCACACGA 52 495 733 Antisense
GGAACCAGTGCTTGAGAACCTTTAT 684 529 768 Antisense
TGACAGCGAAGGACGTCTCTCGTCG 633 571 864 Antisense
TCTCTCGTCGGCCGAGGCTGAAAAG 312 609 879 Antisense
GAATCGATGCGATGAGCTACACTGT 542 329 914 Antisense
AAGTGGCGACCAAGCTGACTTCATT 131 159 1034 Antisense
Sequence Source Affymetrix Proprietary Database