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[193867_s_at] erythrocyte plasma membrane glycoprotein like

Description B0240.1 /REP_DB=WormBase Gene ID /WP=CE05172 /GEN=rhr-2 /TR=Q17463 /GB=CAA98418.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=erythrocyte plasma membrane glycoprotein like
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 02      6grp_highest_sub > 02_03      6grp_cgc > 72      6grp_high1_sub > 02_03      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 291.4
(-1.5)
P 		272.4
(-2)
P 		239.5
(-3)
P 		442.5
(3)
P 		203
B 272.3
(-2)
P 		274.2
(-2)
P 		222.5
(-3)
P 		520.3
(3)
P 		298
C 302.3
(-2.7)
P 		293.3
(-3)
P 		352.6
(-1.2)
P 		493.4
(3)
P 		200
avr 288.7
(-2.5) 		280
(-2.8) 		271.5
(-3) 		485.4
(3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 350.6
(-1.7)
P 		452
(0.2)
P 		600.3
(3)
P 		479.7
(0.7)
P 		284.3
(-3)
P 		290.1
(-2.9)
P 		316
B 320.9
(-0.7)
P 		442.3
(3)
P 		348.1
(0.2)
P 		324.2
(-0.6)
P 		320.9
(-0.7)
P 		242.8
(-3)
P 		200
C 339.4
(-0.4)
P 		424.7
(2.4)
P 		443.8
(3)
P 		387.8
(1.2)
P 		257.9
(-3)
P 		283
(-2.2)
P 		186
avr 337
(-1) 		439.7
(2.2) 		464.1
(3) 		397.2
(0.9) 		287.7
(-2.5) 		272
(-3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 106.1
(3)
P 		59.1
(-3)
P 		62.6
(-2.6)
P 		64.8
(-2.3)
P 		47
B 86.8
(0.6)
P 		67.7
(-1.4)
P 		51.5
(-3)
P 		110.9
(3)
P 		59
C 100.1
(-0.4)
P 		84.3
(-2.8)
P 		122.9
(3)
P 		83.2
(-3)
P 		40
avr 97.7
(3) 		70.4
(-3) 		79
(-1.1) 		86.3
(0.5) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 64.6
(-3)
P 		160.7
(3)
P 		130.7
(1.1)
P 		121.7
(0.6)
P 		85.8
(-1.7)
P 		70.6
(-2.6)
P 		96
B 111.7
(-0.4)
P 		147.2
(3)
P 		84.5
(-3)
P 		85.9
(-2.9)
P 		130.4
(1.4)
P 		90.5
(-2.4)
P 		63
C 125.8
(2.6)
P 		129.6
(3)
P 		113
(1.1)
P 		78
(-3)
P 		83.4
(-2.4)
P 		94.7
(-1.1)
P 		52
avr 100.7
(-1.5) 		145.8
(3) 		109.4
(-0.6) 		95.2
(-2) 		99.9
(-1.6) 		85.3
(-3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193867_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14064
Sequence Type Exemplar sequence
Representative Public ID B0240.1 NCBI
Target Description B0240.1 /REP_DB=WormBase Gene ID /WP=CE05172 /GEN=rhr-2 /TR=Q17463 /GB=CAA98418.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=erythrocyte plasma membrane glycoprotein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073560 NCBI Caenorhabditis elegans RH (Rhesus) antigen Related family member (rhr-2) (rhr-2) mRNA, complete cds. 11/11 None
SNAP00000008961 ENSEMBL cdna:SNAP chromosome:CEL140:V:11730569:11732748:-1 11/11 None
GENEFINDER00000008969 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11721261:11732748:-1 11/11 None
B0240.1.2 ENSEMBL cdna:known chromosome:CEL140:V:11730489:11732748:-1 gene:B0240.1 11/11 None
B0240.1.1 ENSEMBL cdna:known chromosome:CEL140:V:11730548:11732749:-1 gene:B0240.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11730568-11732748(-) 100.0 100.0
Public Domain and Genome References
Gene Title erythrocyte plasma membrane glycoprotein like
Gene Symbol rhr-2
Ensembl B0240.1
Entrez Gene 179606 Entrez gene
SwissProt Q17463 EMBL-EBI
WormBase CE05172 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585024_AT similar to Rhesus blood group, C glycoprotein cfa
CANINE_2:CFA.6938.1.A1_AT similar to Rhesus blood group, C glycoprotein cfa
CANINE_2:CFAAFFX.18542.1.S1_AT similar to Rhesus blood group, C glycoprotein cfa
CANINE_2:CFAAFFX.18549.1.S1_S_AT similar to Rhesus blood group, C glycoprotein cfa
CHICKEN:GGA.11326.1.S1_AT Rhesus blood group, C glycoprotein gga
HG-U133A:219554_AT Rhesus blood group, C glycoprotein hs
HG-U133_PLUS_2:219554_AT Rhesus blood group, C glycoprotein hs
HG-FOCUS:219554_AT Rhesus blood group, C glycoprotein hs
HG-U133A_2:219554_AT Rhesus blood group, C glycoprotein hs
U133_X3P:G7706682_3P_AT Rhesus blood group, C glycoprotein hs
MG-U74BV2:106010_AT Rhesus blood group-associated C glycoprotein mm
MG-U74CV2:171350_I_AT Rhesus blood group-associated C glycoprotein mm
MOE430A:1417362_AT Rhesus blood group-associated C glycoprotein mm
MOUSE430A_2:1417362_AT Rhesus blood group-associated C glycoprotein mm
MOUSE430_2:1417362_AT Rhesus blood group-associated C glycoprotein mm
RG-U34B:RC_AI044046_AT Rhesus blood group-associated C glycoprotein rn
RAE230A:1376487_AT Rhesus blood group-associated C glycoprotein rn
RAT230_2:1376487_AT Rhesus blood group-associated C glycoprotein rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98418 Hypothetical protein B0240.1 [Caenorhabditis elegans] ref|NP_505961.1| RH (Rhesus) antigen Related family member (rhr-2) [Caenorhabditis elegans] 0.0
blast AAR97529 Rhesus protein 1 [Caenorhabditis briggsae] emb|CAE75309.1| Hypothetical protein CBG23279 [Caenorhabditis briggsae] 0.0
blast CAD56284 Hypothetical protein B0240.3 [Caenorhabditis elegans] ref|NP_505960.1| abnormal DAuer Formation family member (daf-11) [Caenorhabditis elegans] 0.0
blast CAE75310 Hypothetical protein CBG23280 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010256 EMBL-EBI Rh-like protein/ammonium transporter 1.0E-126
Pfam IPR000719 EMBL-EBI Protein kinase 0.21
Pfam IPR000719 EMBL-EBI Protein kinase 8.4E-4
Pfam IPR001054 EMBL-EBI Guanylate cyclase 1.3E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505961.1 10 12-29,49-68,75-97,137-159,171-188,208-227,240-259,292-314,327-349,384-406
B0240.1.2 10 12-29,49-68,75-97,137-159,171-188,208-227,240-259,292-314,327-349,384-406
B0240.1.1 10 12-29,49-68,75-97,137-159,171-188,208-227,240-259,292-314,327-349,384-406
SNAP00000008961 10 12-29,49-68,75-97,137-159,171-188,208-227,240-259,292-314,327-349,384-406
GENEFINDER00000008969 11 12-29,49-68,75-97,137-159,171-188,208-227,240-259,292-314,327-349,384-406,880-902
Sequence
Target Sequence 
>C. ELEGANS:193867_S_AT
ggaggagttgctataggttcatctgcaaacgctgttctccatccatatcatgcagttatt
gtcggtgtaatagctgctcttctctcagttattggacatgcttggatcagtccaagactt
gaaagaactttccatctttttgatacttgcggagttcataatctacatggaatgcctggt
attttagccggtttattgagtataggatttgcttatttctatgaaccagaaagttatgga
aagacgttataccatatttatccgtattggattggaggcgaactccatggagatcgagag
aacgtttcgcaagcacaatatcaagctttaggtttattaacaattcttgtaactgctgtt
attggtggtttgcttacaggttgcattctaaaaattaaagtatggaatcaagttgatgat
cccgatttcccgcatggtgaaatgaattattatgcacaatctgatgttaattttttgagt
aaatataaacatgcccaagagcaagagcgacttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGAGTTGCTATAGGTTCATCTG 102 517 841 Antisense
TAGGTTCATCTGCAAACGCTGTTCT 328 653 854 Antisense
TGTTCTCCATCCATATCATGCAGTT 248 563 873 Antisense
TTGTCGGTGTAATAGCTGCTCTTCT 698 705 899 Antisense
GCTGCTCTTCTCTCAGTTATTGGAC 458 297 913 Antisense
GAACTTTCCATCTTTTTGATACTTG 661 349 965 Antisense
GAATGCCTGGTATTTTAGCCGGTTT 557 325 1010 Antisense
GAGAACGTTTCGCAAGCACAATATC 418 391 1138 Antisense
GGTGGTTTGCTTACAGGTTGCATTC 211 499 1204 Antisense
TCAAGTTGATGATCCCGATTTCCCG 570 609 1248 Antisense
TGCCCAAGAGCAAGAGCGACTTCGA 61 585 1332 Antisense
Sequence Source Affymetrix Proprietary Database