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[193865_at] B.subtilis teichoic acids biosynthesis protein GGAB like

Description F13G3.6 /REP_DB=WormBase Gene ID /WP=CE05618 /TR=Q19421 /GB=CAA95792.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=B.subtilis teichoic acids biosynthesis protein GGAB like
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 92      6grp_total > 99      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 192.6
(-2.1)
P 		187.9
(-2.2)
P 		154.6
(-3)
P 		407.5
(3)
P 		253
B 272.1
(-0.5)
P 		177.6
(-3)
P 		280.7
(-0.3)
P 		408.9
(3)
P 		231
C 336.3
(2.3)
P 		121
(-3)
P 		170.7
(-1.8)
P 		366.6
(3)
P 		246
avr 267
(-0.3) 		162.2
(-3) 		202
(-2) 		394.3
(3) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 267.4
(-1.7)
P 		305.9
(-0.6)
P 		221.6
(-3)
P 		268.4
(-1.7)
P 		416.1
(2.5)
P 		434.9
(3)
P 		213
B 199.1
(-3)
P 		257.4
(-1.4)
P 		220.5
(-2.4)
P 		256.1
(-1.5)
P 		424
(3)
P 		356.2
(1.2)
P 		225
C 331.8
(-0.2)
P 		208.8
(-3)
P 		356.8
(0.4)
P 		305.6
(-0.8)
P 		369.2
(0.7)
P 		469.4
(3)
P 		261
avr 266.1
(-2.7) 		257.4
(-3) 		266.3
(-2.7) 		276.7
(-2.3) 		403.1
(2.4) 		420.2
(3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 70.1
(3)
P 		40.8
(-2.9)
P 		40.4
(-3)
P 		59.6
(0.9)
P 		30
B 86.8
(3)
P 		43.9
(-3)
P 		65
(-0.1)
P 		87.1
(3)
P 		43
C 111.3
(3)
P 		34.8
(-3)
P 		59.5
(-1.1)
P 		61.8
(-0.9)
P 		77
avr 89.4
(3) 		39.8
(-3) 		55
(-1.2) 		69.5
(0.6) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 49.3
(-2.9)
P 		108.8
(1.7)
P 		48.3
(-3)
P 		68.1
(-1.5)
P 		125.5
(3)
P 		105.9
(1.5)
P 		77
B 69.3
(-2.2)
P 		85.7
(-1.4)
P 		53.5
(-3)
P 		67.8
(-2.3)
P 		172.3
(3)
P 		132.8
(1)
P 		119
C 123
(0.9)
P 		63.7
(-2.9)
P 		90.8
(-1.2)
P 		61.5
(-3)
P 		119.5
(0.6)
P 		157.1
(3)
P 		96
avr 80.5
(-1.7) 		86.1
(-1.2) 		64.2
(-3) 		65.8
(-2.9) 		139.1
(3) 		131.9
(2.4) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2139
Sequence Type Exemplar sequence
Representative Public ID F13G3.6 NCBI
Target Description F13G3.6 /REP_DB=WormBase Gene ID /WP=CE05618 /TR=Q19421 /GB=CAA95792.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=B.subtilis teichoic acids biosynthesis protein GGAB like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059664 NCBI Caenorhabditis elegans F13G3.6 (F13G3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000006949 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7309296:7312817:-1 11/11 None
SNAP00000006941 ENSEMBL cdna:SNAP chromosome:CEL140:I:7311475:7312572:-1 11/11 None
F13G3.6 ENSEMBL cdna:known chromosome:CEL140:I:7311611:7312817:-1 gene:F13G3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7311541-7312748(-) 100.0 100.0
Public Domain and Genome References
Gene Title B.subtilis teichoic acids biosynthesis protein GGAB like
Ensembl F13G3.6
Entrez Gene 184431 Entrez gene
SwissProt Q19421 EMBL-EBI
WormBase CE05618 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.20289.1.S1_AT similar to UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 cfa
CHICKEN:GGAAFFX.24188.1.S1_AT similar to RIKEN cDNA 6030413G23 gene gga
CHICKEN:GGAAFFX.948.1.S1_AT similar to RIKEN cDNA 6030413G23 gene gga
MOUSE430_2:1438335_AT RIKEN cDNA 6030413G23 gene mm
MOE430B:1438335_AT RIKEN cDNA 6030413G23 gene mm
MOE430A:1427187_AT RIKEN cDNA 6030413G23 gene mm
MOUSE430A_2:1427187_AT RIKEN cDNA 6030413G23 gene mm
MOUSE430_2:1427187_AT RIKEN cDNA 6030413G23 gene mm
RAE230A:1388610_AT UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 rn
RAT230_2:1388610_AT UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA95792 Hypothetical protein F13G3.6 [Caenorhabditis elegans] ref|NP_492065.1| F13G3.6 [Caenorhabditis elegans] 0.0
blast CAE74211 Hypothetical protein CBG21893 [Caenorhabditis briggsae] 1.0E-177
blast Q19420 Probable inositol monophosphatase (IMPase) (IMP) (Inositol-1(or 4)-monophosphatase) 1.0E-160
blast CAE74211 Hypothetical protein CBG21893 [Caenorhabditis briggsae] 1.0E-158
blast CAA95792 Hypothetical protein F13G3.6 [Caenorhabditis elegans] ref|NP_492065.1| F13G3.6 [Caenorhabditis elegans] 1.0E-145
blast CAE74211 Hypothetical protein CBG21893 [Caenorhabditis briggsae] 1.0E-144
blast AAH96875 Hypothetical protein LOC619261 [Danio rerio] ref|NP_001028914.1| hypothetical protein LOC619261 [Danio rerio] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 3.9E-31
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 3.4E-99
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 5.8E-12
Sequence
Target Sequence 
>C. ELEGANS:193865_AT
tcatagactaccagaaggctccacaacaagatacacaaaatgggcgaactcgatgatcgg
agacaaaatcagaagtcaagtctacacatctcatggtcccacgctcgttgctcctacttg
gttcattagtagagcacttttcgataaggttggcggttttcgaacagatgtttcgtgtgg
ttttcctgaagacttagaatttttctacaagtgcttggatttcccggagtgtatttttga
taaagtcgatgatgacattgtcatgtaccgataccataaaaactgtgcatcacacagcgt
tcaagaacaaacaatttggaatttccgtttatcgagattaaaagagaaatacatcgcaaa
atgggacaaattcacaatctggagtgctgggaagcaaggaaaacgtcttttcaaaagtct
cacagatgacgagaagatcaaagtcagagaattttgcgatattgatgagtcaaaaatcgg
gagaggtgttcatgaagagtttgatgaagtgtcacgcagtgtgactcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATAGACTACCAGAAGGCTCCACA 694 611 417 Antisense
GAAGGCTCCACAACAAGATACACAA 486 333 430 Antisense
TCAAGTCTACACATCTCATGGTCCC 305 633 492 Antisense
CGTTGCTCCTACTTGGTTCATTAGT 28 247 522 Antisense
GAGCACTTTTCGATAAGGTTGGCGG 564 387 548 Antisense
GGTTGGCGGTTTTCGAACAGATGTT 136 507 564 Antisense
GATGTTTCGTGTGGTTTTCCTGAAG 323 409 583 Antisense
AAGTGCTTGGATTTCCCGGAGTGTA 669 157 625 Antisense
GACATTGTCATGTACCGATACCATA 298 371 670 Antisense
AAACTGTGCATCACACAGCGTTCAA 356 127 696 Antisense
GAAGTGTCACGCAGTGTGACTCACA 682 335 922 Antisense
Sequence Source Affymetrix Proprietary Database