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[193863_s_at]

Description F15G9.4B /REP_DB=WormBase Gene ID /WP=CE18596 /GEN=him-4 /TR=O76518 /GB=CAA87345.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=IG (immunoglobulin) superfamily (47 domains)
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 04      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 50      6grp_total > 14      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 738.3
(3)
P 		431.5
(-2.8)
P 		423.2
(-3)
P 		535.8
(-0.9)
P 		315
B 667.7
(3)
P 		422.2
(-1.6)
P 		350.1
(-3)
P 		552.4
(0.8)
P 		318
C 717.8
(3)
P 		399.7
(-2.9)
P 		393.3
(-3)
P 		429.2
(-2.3)
P 		325
avr 707.9
(3) 		417.8
(-2.5) 		388.9
(-3) 		505.8
(-0.8) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 676.6
(2.7)
P 		704
(3)
P 		309.3
(-1.9)
P 		391.9
(-0.9)
P 		320.5
(-1.8)
P 		221.2
(-3)
P 		483
B 712.8
(3)
P 		479.9
(0.2)
P 		470.1
(0.1)
P 		455.6
(-0.1)
P 		314.4
(-1.8)
P 		215.4
(-3)
P 		497
C 620.3
(3)
P 		478.2
(1)
P 		540.1
(1.8)
P 		387.2
(-0.4)
P 		326.5
(-1.2)
P 		203.5
(-3)
P 		417
avr 669.9
(3) 		554
(1.5) 		439.8
(-0) 		411.6
(-0.4) 		320.5
(-1.6) 		213.4
(-3) 		457
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 268.8
(3)
P 		93.7
(-2.5)
P 		110.6
(-2)
P 		78.4
(-3)
P 		190
B 212.9
(3)
P 		104.3
(-1.9)
P 		81.1
(-3)
P 		117.7
(-1.3)
P 		132
C 237.6
(3)
P 		114.9
(-1.5)
P 		137.1
(-0.7)
P 		72.4
(-3)
P 		165
avr 239.8
(3) 		104.3
(-2.4) 		109.6
(-2.2) 		89.5
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 124.7
(-0.8)
P 		250.4
(3)
P 		67.4
(-2.6)
P 		99.4
(-1.6)
P 		96.7
(-1.7)
P 		53.9
(-3)
P 		197
B 248
(3)
P 		159.7
(-0.2)
P 		114.2
(-1.8)
P 		120.7
(-1.6)
P 		127.7
(-1.3)
P 		80.3
(-3)
P 		168
C 229.9
(3)
P 		145.9
(-0.1)
P 		137.5
(-0.4)
P 		77.9
(-2.6)
P 		105.7
(-1.6)
P 		68.1
(-3)
P 		162
avr 200.9
(3) 		185.3
(2.3) 		106.4
(-1.2) 		99.3
(-1.6) 		110
(-1.1) 		67.4
(-3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193863_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17140
Sequence Type Exemplar sequence
Representative Public ID F15G9.4B NCBI
Target Description F15G9.4B /REP_DB=WormBase Gene ID /WP=CE18596 /GEN=him-4 /TR=O76518 /GB=CAA87345.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=IG (immunoglobulin) superfamily (47 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077234(11), NM_001029411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077234 NCBI Caenorhabditis elegans High Incidence of Males (increased X chromosome loss) family member (him-4) (him-4) mRNA, complete cds. 11/11 A 
NM_001029411 NCBI Caenorhabditis elegans High Incidence of Males (increased X chromosome loss) family member (him-4) (him-4) mRNA, complete cds. 11/11 None
SNAP00000010996 ENSEMBL cdna:SNAP chromosome:CEL140:X:9745363:9753500:1 11/11 None
GENEFINDER00000011005 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9746831:9753500:1 11/11 None
F15G9.4a ENSEMBL cdna:known chromosome:CEL140:X:9717557:9753684:1 gene:F15G9.4 11/11 A 
F15G9.4b ENSEMBL cdna:known chromosome:CEL140:X:9717557:9753500:1 gene:F15G9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9717556-9753500(+) 99.59 100.0
Public Domain and Genome References
Ensembl F15G9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87344 Hypothetical protein F15G9.4a [Caenorhabditis elegans] emb|CAA87335.1| Hypothetical protein F15G9.4a [Caenorhabditis elegans] ref|NP_509635.2| High Incidence of Males (increased X chromosome loss) family member (him-4) [Caenorhabditis elegans] 0.0
blast CAA87345 Hypothetical protein F15G9.4b [Caenorhabditis elegans] emb|CAA87336.1| Hypothetical protein F15G9.4b [Caenorhabditis elegans] ref|NP_001024582.1| High Incidence of Males (increased X chromosome loss) family member (him-4) [Caenorhabditis elegans] gb|AAC26792.1| hemicentin precursor [Caenorhabditis elegans] 0.0
blast CAE69764 Hypothetical protein CBG16045 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.3E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.5E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.7E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.0E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0050
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.1E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 5.5E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.4E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.9E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.0E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.9E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.0E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.7E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0026
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.2E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.51
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.4E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0026
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.2E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.51
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.4E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.2E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.1E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.51
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 9.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011005 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:193863_S_AT
gagtgcgctttctatcaaccatgcgattttgaatgcataaactatgatggaggattccaa
tgcaattgcccattaggatatgagcttgctgaagaaggatgtcgagatgttaatgagtgc
gagtcagtgcgatgcgaagatggcaaagcttgcttcaaccaactgggaggctatgaatgt
atcgatgacccctgtccagctaactacagtctggttgatgacagatactgcgagccggaa
tgtgagaactgtacttcaacaccaattcaagtacacatgttggcaattccaagtggactc
ccgatttctcacattgcaacactcaccgcttacgacaagagtggaagagttctcaatgac
acaacttatgcaatatccgatactggagctccacttgccagaggaagaatgacatctggt
ccattcaccatcaaagctgtaaagcgtggtcatgctcaagtgtggactaacagagtactt
gctgcaggtgatcatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGCGCTTTCTATCAACCATGCG 465 401 15007 Antisense
GGAGGATTCCAATGCAATTGCCCAT 96 517 15055 Antisense
GAGTGCGAGTCAGTGCGATGCGAAG 545 399 15121 Antisense
GCAAAGCTTGCTTCAACCAACTGGG 123 319 15149 Antisense
CCCCTGTCCAGCTAACTACAGTCTG 641 261 15195 Antisense
GAGAACTGTACTTCAACACCAATTC 370 391 15250 Antisense
AATTCCAAGTGGACTCCCGATTTCT 130 179 15291 Antisense
CGATTTCTCACATTGCAACACTCAC 276 249 15308 Antisense
AATATCCGATACTGGAGCTCCACTT 253 173 15378 Antisense
ATGACATCTGGTCCATTCACCATCA 421 45 15415 Antisense
GTACTTGCTGCAGGTGATCATCACA 33 461 15481 Antisense
Sequence Source Affymetrix Proprietary Database