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[193862_s_at]

Description ZK816.2 /REP_DB=WormBase Gene ID /WP=CE05115 /CHR=X /FEA=Sanger Annotation /DEF=yeast phosphate system positive regulatory protein PHO4 (ST.LOUIS) TR:Q23608 protein_id:AAA82323.1
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 31      6grp_total > 05      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 785
1 2 3 4 range
A 937.5
(3)
P 		627.4
(-0.4)
P 		574
(-0.9)
P 		384.4
(-3)
P 		553
B 1169.2
(3)
P 		660.9
(-1.8)
P 		707.2
(-1.3)
P 		529.1
(-3)
P 		640
C 1071.1
(3)
P 		449.8
(-2.7)
P 		562.1
(-1.7)
P 		416.9
(-3)
P 		654
avr 1059.3
(3) 		579.4
(-1.7) 		614.4
(-1.3) 		443.5
(-3) 		616

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 753
1 2 3 4 5 6 range
A 1282.6
(2.6)
P 		1334.4
(3)
P 		590.3
(-3)
P 		934.4
(-0.2)
P 		832.8
(-1)
P 		900.1
(-0.5)
P 		744
B 1235.8
(3)
P 		1041.2
(1.2)
P 		581.2
(-3)
P 		877.8
(-0.3)
P 		832.8
(-0.7)
P 		630.9
(-2.5)
P 		655
C 1149.5
(3)
P 		1042.1
(1.7)
P 		959.5
(0.6)
P 		667.2
(-3)
P 		841
(-0.8)
P 		690
(-2.7)
P 		482
avr 1222.6
(3) 		1139.2
(2) 		710.3
(-3) 		826.5
(-1.6) 		835.5
(-1.5) 		740.3
(-2.6) 		512
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 341.4
(3)
P 		136.2
(-1.3)
P 		150
(-1)
P 		56.3
(-3)
P 		285
B 372.9
(3)
P 		163.2
(-1.8)
P 		163.9
(-1.8)
P 		112.8
(-3)
P 		260
C 354.6
(3)
P 		129.3
(-1.8)
P 		195.9
(-0.3)
P 		70.3
(-3)
P 		284
avr 356.3
(3) 		142.9
(-1.6) 		169.9
(-1) 		79.8
(-3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 236.4
(-1.1)
P 		474.6
(3)
P 		128.6
(-3)
P 		237
(-1.1)
P 		251.3
(-0.9)
P 		219.1
(-1.4)
P 		346
B 430
(3)
P 		346.6
(1.3)
P 		141.1
(-3)
P 		232.5
(-1.1)
P 		338.4
(1.1)
P 		235.3
(-1)
P 		289
C 426.1
(3)
P 		318
(0.8)
P 		244.2
(-0.7)
P 		134.2
(-3)
P 		272.1
(-0.2)
P 		231
(-1)
P 		292
avr 364.2
(2.6) 		379.7
(3) 		171.3
(-3) 		201.2
(-2.1) 		287.3
(0.3) 		228.5
(-1.4) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193862_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18610
Sequence Type Exemplar sequence
Representative Public ID ZK816.2 NCBI
Target Description ZK816.2 /REP_DB=WormBase Gene ID /WP=CE05115 /CHR=X /FEA=Sanger Annotation /DEF=yeast phosphate system positive regulatory protein PHO4 (ST.LOUIS) TR:Q23608 protein_id:AAA82323.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076174(11), NM_076175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076174 NCBI Caenorhabditis elegans F11D5.1a (F11D5.1) mRNA, complete cds. 11/11 A 
NM_076175 NCBI Caenorhabditis elegans F11D5.1b (F11D5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000023572 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3344679:3347041:1 10/11 None
SNAP00000023557 ENSEMBL cdna:SNAP chromosome:CEL140:X:3344904:3347041:1 10/11 None
F11D5.1a ENSEMBL cdna:known chromosome:CEL140:X:3333118:3347240:1 gene:F11D5.1 11/11 A 
F11D5.1b ENSEMBL cdna:known chromosome:CEL140:X:3344679:3347013:1 gene:F11D5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3344679-3347014(+) 100.0 100.0
Public Domain and Genome References
Ensembl F11D5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508575 F11D5.1a [Caenorhabditis elegans] gb|AAF99908.2| Hypothetical protein F11D5.1a [Caenorhabditis elegans] 0.0
blast T16034 hypothetical protein F11D5.1 - Caenorhabditis elegans 0.0
blast NP_508576 F11D5.1b [Caenorhabditis elegans] gb|AAK68318.1| Hypothetical protein F11D5.1b [Caenorhabditis elegans] 1.0E-157
blast CAE68411 Hypothetical protein CBG14189 [Caenorhabditis briggsae] 1.0E-154
blast T29600 hypothetical protein ZK816.2 - Caenorhabditis elegans 1.0E-152
Sequence
Target Sequence 
>C. ELEGANS:193862_S_AT
gacaattccgacggcgacagtcgcgatggtaacgactcatatgacatcacgccaatgcgt
ccaaactctcttgtgttcacccgcctagcgaacgaagaagaaatgggaggtgatggaaat
gtgatcagtcgcagccttctgtccttggtggccgaagaagatttgccagactttctcgtt
gctctcaacgagaagcccattcgatatgtagttgttgaagaatcagaaaagccgagtact
tccagcatactcagatcgagagatgctagaaaggaagaaaaggttcagaagggttccacg
cgaatcagattctgtacagacaacgctatggcttatgcgtatttggatgaaattacagca
acacgatcattacagtgggatgatggaactgtcatcgagtactcatactttaaagactta
gaagctgcggaggaagccgccatggcacataatgacccgacattggcgttgattgaacaa
tgggagcaacaaatcgcaaacgataatatccacccattgacacacgatttgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATTCCGACGGCGACAGTCGCG 354 363 520 Antisense
AACGACTCATATGACATCACGCCAA 405 145 550 Antisense
ATCACGCCAATGCGTCCAAACTCTC 78 23 565 Antisense
GAAATGTGATCAGTCGCAGCCTTCT 602 361 635 Antisense
AAGATTTGCCAGACTTTCTCGTTGC 66 157 677 Antisense
GTTGCTCTCAACGAGAAGCCCATTC 397 439 697 Antisense
GAAAAGCCGAGTACTTCCAGCATAC 307 353 745 Antisense
GAAGGGTTCCACGCGAATCAGATTC 378 335 807 Antisense
CGCCATGGCACATAATGACCCGACA 435 257 957 Antisense
GACCCGACATTGGCGTTGATTGAAC 65 383 973 Antisense
CCACCCATTGACACACGATTTGACT 93 275 1029 Antisense
Sequence Source Affymetrix Proprietary Database