[Home] | [Total List]

[193859_at] spermatogenesis-defective protein SPE-17 like

Description ZK617.3 /REP_DB=WormBase Gene ID /WP=CE06637 /GEN=spe-17 /TR=Q23549 /GB=CAA98063.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=spermatogenesis-defective protein SPE-17 like
Cluster 6grp_total > 97      4grp_total > 36      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 12.6
(-2.4)
A 		20.1
(2)
A 		11.6
(-3)
A 		21.9
(3)
A 		10
B 17.1
(-3)
A 		92.1
(3)
A 		17.3
(-3)
A 		73
(1.5)
A 		75
C 57
(3)
A 		18.7
(-2.3)
A 		13.8
(-3)
A 		20.1
(-2.1)
A 		43
avr 28.9
(-0) 		43.6
(3) 		14.2
(-3) 		38.3
(1.9) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 12.9
(-3)
A 		12.3
(-3)
A 		95.3
(1.8)
A 		78
(0.8)
A 		83.1
(1.1)
A 		115.1
(3)
A 		103
B 19.4
(-2.6)
A 		22.1
(-2.4)
A 		11.7
(-3)
A 		29.8
(-2)
A 		102.4
(1.9)
A 		123
(3)
A 		111
C 17.1
(-2.8)
A 		15
(-2.9)
A 		30.7
(-2.3)
A 		12.7
(-3)
A 		95.2
(0.4)
A 		158.3
(3)
A 		146
avr 16.5
(-3) 		16.5
(-3) 		45.9
(-1.5) 		40.2
(-1.8) 		93.6
(1) 		132.1
(3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 4.6
(3)
A 		4.4
(2.3)
A 		3
(-3)
A 		3.2
(-2.3)
A 		2
B 5.5
(-2.5)
A 		22.8
(3)
A 		4
(-3)
A 		15.6
(0.7)
A 		19
C 18.9
(3)
A 		5.4
(-2.2)
A 		4.8
(-2.5)
A 		3.4
(-3)
A 		16
avr 9.7
(2) 		10.9
(3) 		3.9
(-3) 		7.4
(0) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 2.4
(-3)
A 		4.4
(-2.5)
A 		20.7
(1.3)
A 		19.8
(1.1)
A 		25.1
(2.3)
A 		28
(3)
A 		26
B 6.8
(-2.4)
A 		7.4
(-2.4)
A 		2.8
(-3)
A 		7.9
(-2.3)
A 		41.6
(2.4)
A 		45.9
(3)
A 		43
C 6.3
(-2.6)
A 		4.6
(-2.8)
A 		7.8
(-2.4)
A 		2.6
(-3)
A 		30.8
(0.4)
A 		53
(3)
A 		50
avr 5.2
(-3) 		5.5
(-3) 		10.4
(-2.2) 		10.1
(-2.2) 		32.5
(1.4) 		42.3
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9001
Sequence Type Exemplar sequence
Representative Public ID ZK617.3 NCBI
Target Description ZK617.3 /REP_DB=WormBase Gene ID /WP=CE06637 /GEN=spe-17 /TR=Q23549 /GB=CAA98063.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=spermatogenesis-defective protein SPE-17 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069874(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069874 NCBI Caenorhabditis elegans defective SPErmatogenesis family member (spe-17) (spe-17) mRNA, complete cds. 9/11 None
SNAP00000023404 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12013464:12013984:1 9/11 None
GENEFINDER00000023545 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12010849:12013984:1 11/11 None
ZK617.3 ENSEMBL cdna:known chromosome:CEL140:IV:12013451:12013984:1 gene:ZK617.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12013122-12013990(+) 95.72 100.0
Public Domain and Genome References
Gene Title spermatogenesis-defective protein SPE-17 like
Gene Symbol spe-17
Ensembl ZK617.3
Entrez Gene 178136 Entrez gene
SwissProt P34890 EMBL-EBI
WormBase CE28723 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27933 hypothetical protein ZK617.3 - Caenorhabditis elegans 1.0E-104
blast P34890 Spermatogenesis-defective protein spe-17 3.0E-70
blast CAA98063 Hypothetical protein ZK617.3 [Caenorhabditis elegans] ref|NP_502275.1| defective SPErmatogenesis family member (spe-17) [Caenorhabditis elegans] 6.0E-70
blast P34890 Spermatogenesis-defective protein spe-17 6.0E-70
blast T27933 hypothetical protein ZK617.3 - Caenorhabditis elegans 6.0E-70
Sequence
Target Sequence 
>C. ELEGANS:193859_AT
gcattaaattttcccgtgacctgacaccagttttccatgttttcaaaaacggcgtggttt
ttttttctaatattgaaatttcaacgattttgaattatttctcactctttgaaattatca
agcaactgtttcttatgcaaatggccgatattgctaaacagcgagaacaacctccacgtg
caatgagcaccacgtcgggttctgatgttctgaagagtacaacaacgggcactactaccg
gcaccacgaaaagctcggtccacacctcggatacgaactatggagttggctcgttgcgct
ctgattgtagtgaggaaggattcggatccaatctgacacctgaagaagccaattggctca
atatggctcgagtgttcaccaaagccgagaagccattcaaggagcaaaagacgttccgcg
tggctcggaagttgagaacgtggcggccacgacgtagtgttacttggagttttctccgca
gattgtacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTAAATTTTCCCGTGACCTGAC 156 307 104 Antisense
ACCTGACACCAGTTTTCCATGTTTT 88 89 122 Antisense
GAACAACCTCCACGTGCAATGAGCA 326 353 268 Antisense
CAATGAGCACCACGTCGGGTTCTGA 277 181 284 Antisense
ACTACTACCGGCACCACGAAAAGCT 342 97 334 Antisense
GTCCACACCTCGGATACGAACTATG 648 475 361 Antisense
GAACTATGGAGTTGGCTCGTTGCGC 385 349 378 Antisense
ATTCGGATCCAATCTGACACCTGAA 240 9 423 Antisense
GGAGCAAAAGACGTTCCGCGTGGCT 400 517 504 Antisense
GCGGCCACGACGTAGTGTTACTTGG 421 273 546 Antisense
GGAGTTTTCTCCGCAGATTGTACAA 641 517 569 Antisense
Sequence Source Affymetrix Proprietary Database