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[193856_at] Mitochondrial processing protease enhancing protein

Description F56D2.1 /REP_DB=WormBase Gene ID /WP=CE11226 /TR=SW:P98080 /GB=AAB52679.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Mitochondrial processing protease enhancing protein
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 31      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 06      6grp_total > 32      4grp_total > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6088
1 2 3 4 range
A 9844.7
(1.9)
P 		10841.7
(3)
P 		10028.7
(2.1)
P 		5457.5
(-3)
P 		5384
B 10238.8
(2.7)
P 		9775.5
(2.2)
P 		10490.9
(3)
P 		5331.2
(-3)
P 		5160
C 8708
(1.9)
P 		9601.7
(3)
P 		9448.8
(2.8)
P 		4753.9
(-3)
P 		4848
avr 9597.2
(2.4) 		10073
(3) 		9989.5
(2.9) 		5180.9
(-3) 		4892

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5166
1 2 3 4 5 6 range
A 9992.2
(2.9)
P 		9296
(1.6)
P 		10060.4
(3)
P 		8591.3
(0.4)
P 		7291.1
(-1.9)
P 		6697.9
(-3)
P 		3363
B 9716.7
(1)
P 		9703.8
(1)
P 		11462.5
(3)
P 		8172.6
(-0.8)
P 		6438.9
(-2.8)
P 		6296.9
(-3)
P 		5166
C 9030.7
(0.7)
P 		9374.3
(1.3)
P 		10502.5
(3)
P 		7748.1
(-1.2)
P 		7332.9
(-1.9)
P 		6596.1
(-3)
P 		3906
avr 9579.9
(1.4) 		9458
(1.2) 		10675.1
(3) 		8170.7
(-0.6) 		7021
(-2.3) 		6530.3
(-3) 		4145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2786
1 2 3 4 range
A 3584.4
(3)
P 		2353.4
(0.3)
P 		2621.7
(0.9)
P 		798.9
(-3)
P 		2786
B 3265.1
(3)
P 		2414.3
(0.6)
P 		2431
(0.6)
P 		1136.1
(-3)
P 		2129
C 2882.6
(2)
P 		2760.6
(1.7)
P 		3293.2
(3)
P 		801.6
(-3)
P 		2492
avr 3244
(3) 		2509.4
(1.1) 		2782
(1.8) 		912.2
(-3) 		2332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1823
1 2 3 4 5 6 range
A 1842
(-2.2)
P 		3306.1
(3)
P 		2190.9
(-1)
P 		2178.9
(-1)
P 		2200.1
(-1)
P 		1630.7
(-3)
P 		1675
B 3380.9
(3)
P 		3230
(2.3)
P 		2783.4
(0.1)
P 		2164.7
(-3)
P 		2616
(-0.8)
P 		2348.1
(-2.1)
P 		1216
C 3347.3
(3)
P 		2860.4
(1.4)
P 		2673.1
(0.7)
P 		1558.2
(-3)
P 		2372.8
(-0.3)
P 		2208.1
(-0.8)
P 		1789
avr 2856.7
(1.6) 		3132.2
(3) 		2549.1
(-0) 		1967.3
(-3) 		2396.3
(-0.8) 		2062.3
(-2.5) 		1165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7808
Sequence Type Exemplar sequence
Representative Public ID F56D2.1 NCBI
Target Description F56D2.1 /REP_DB=WormBase Gene ID /WP=CE11226 /TR=SW:P98080 /GB=AAB52679.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Mitochondrial processing protease enhancing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065801 NCBI Caenorhabditis elegans F56D2.1 (F56D2.1) mRNA, complete cds. 11/11 None
SNAP00000013291 ENSEMBL cdna:SNAP chromosome:CEL140:III:5591872:5593961:1 11/11 None
GENEFINDER00000013300 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5592111:5594084:1 11/11 None
F56D2.1.2 ENSEMBL cdna:known chromosome:CEL140:III:5592086:5594738:1 gene:F56D2.1 11/11 None
F56D2.1.4 ENSEMBL cdna:known chromosome:CEL140:III:5592088:5594738:1 gene:F56D2.1 11/11 None
F56D2.1.3 ENSEMBL cdna:known chromosome:CEL140:III:5592088:5594738:1 gene:F56D2.1 11/11 None
F56D2.1.1 ENSEMBL cdna:known chromosome:CEL140:III:5592088:5594738:1 gene:F56D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5592109-5594083(+) 100.0 100.0
Public Domain and Genome References
Gene Title Mitochondrial processing protease enhancing protein
Ensembl F56D2.1
Entrez Gene 175772 Entrez gene
SwissProt P98080 EMBL-EBI
WormBase CE11226 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587035_S_AT similar to ubiquinol-cytochrome c reductase core protein I cfa
CANINE:1583148_AT similar to ubiquinol-cytochrome c reductase core protein I cfa
CANINE_2:CFA.794.1.A1_AT similar to ubiquinol-cytochrome c reductase core protein I cfa
CANINE_2:CFA.794.1.A1_S_AT similar to ubiquinol-cytochrome c reductase core protein I cfa
CHICKEN:GGA.4338.1.S1_AT similar to ubiquinol--cytochrome c reductase gga
CHICKEN:GGA.4338.3.S1_A_AT similar to ubiquinol--cytochrome c reductase gga
HG-U95AV2:283_AT ubiquinol-cytochrome c reductase core protein I hs
HC-G110:283_AT ubiquinol-cytochrome c reductase core protein I hs
HG-U133A:201903_AT ubiquinol-cytochrome c reductase core protein I hs
HG-U133_PLUS_2:201903_AT ubiquinol-cytochrome c reductase core protein I hs
HG-FOCUS:201903_AT ubiquinol-cytochrome c reductase core protein I hs
HG-U133A_2:201903_AT ubiquinol-cytochrome c reductase core protein I hs
HUGENEFL:L16842_AT ubiquinol-cytochrome c reductase core protein I hs
U133_X3P:G4507840_3P_AT ubiquinol-cytochrome c reductase core protein I hs
MG-U74AV2:101989_AT ubiquinol-cytochrome c reductase core protein 1 mm
MU11KSUBA:AA239369_AT ubiquinol-cytochrome c reductase core protein 1 mm
MG-U74BV2:109802_F_AT ubiquinol-cytochrome c reductase core protein 1 mm
MOE430A:1428782_A_AT ubiquinol-cytochrome c reductase core protein 1 mm
MOUSE430A_2:1428782_A_AT ubiquinol-cytochrome c reductase core protein 1 mm
MOUSE430_2:1428782_A_AT ubiquinol-cytochrome c reductase core protein 1 mm
MU19KSUBC:TC35861_AT Ubiquinol-cytochrome c reductase core protein 1, mRNA (cDNA clone MGC:41051 IMAGE:1400271) mm
MU19KSUBC:TC35862_AT Ubiquinol-cytochrome c reductase core protein 1, mRNA (cDNA clone MGC:41051 IMAGE:1400271) mm
MU19KSUBC:TC35863_S_AT Ubiquinol-cytochrome c reductase core protein 1, mRNA (cDNA clone MGC:41051 IMAGE:1400271) mm
RG-U34B:RC_AI010239_AT ubiquinol-cytochrome c reductase core protein I rn
RAE230A:1388301_AT ubiquinol-cytochrome c reductase core protein I rn
RAT230_2:1388301_AT ubiquinol-cytochrome c reductase core protein I rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52679 Hypothetical protein F56D2.1 [Caenorhabditis elegans] ref|NP_498202.1| F56D2.1 [Caenorhabditis elegans] sp|P98080|YMT1_CAEEL Hypothetical protein F56D2.1 in chromosome III 0.0
blast CAE64300 Hypothetical protein CBG08976 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 6.4E-40
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 1.7E-65
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 6.4E-40
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 1.7E-65
Sequence
Target Sequence 
>C. ELEGANS:193856_AT
gataccgcaacgataatgtcccacacatgtatgctgctttcgctgttgagggtgttggat
atgcccacaaagatgctctcgctcttcaaattgccaatcaattcattggccaatgggatg
tgacccacgctacatccagaacagctgcttccagacttgtccaaaaaatcggacacgacc
acggagtccataacctccagcatttcaacatcaactacaaagacactggattgttcggaa
tctactttgttgctgatgctcacgacttgaacgacaccagcggaatcatgaagtctgttg
ctcacgaatggaagcatttggcctctgctgccacagaagaagaagtcgccatggccaaga
accaattcagaaccaacttgtaccagaacctcgagaccaacacacaaaaggctggattta
acgctaaggagcttctttacaccggaaatctcagacagttgtcagaacttgaagctcaaa
ttcaaaaggttgacgctggagctgtccgcgaggctatttcaagacatgtgtacgatcgtg
atcttgctgctgtcggagttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACCGCAACGATAATGTCCCACA 128 423 803 Antisense
ACACATGTATGCTGCTTTCGCTGTT 497 109 825 Antisense
GATATGCCCACAAAGATGCTCTCGC 102 427 860 Antisense
CAGAACAGCTGCTTCCAGACTTGTC 393 205 939 Antisense
TAACCTCCAGCATTTCAACATCAAC 173 639 993 Antisense
GTTGCTGATGCTCACGACTTGAACG 158 439 1051 Antisense
TTTGGCCTCTGCTGCCACAGAAGAA 578 665 1119 Antisense
GGAGCTTCTTTACACCGGAAATCTC 281 499 1230 Antisense
AAAGGTTGACGCTGGAGCTGTCCGC 336 121 1287 Antisense
GCTGTCCGCGAGGCTATTTCAAGAC 142 295 1303 Antisense
TGATCTTGCTGCTGTCGGAGTTGGT 461 565 1341 Antisense
Sequence Source Affymetrix Proprietary Database