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[193855_at] B. subtilis glycerol-3-phosphate cytidylyltransferase

Description C39D10.3 /REP_DB=WormBase Gene ID /WP=CE27104 /TR=Q18524 /GB=AAK39211.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=B. subtilis glycerol-3-phosphate cytidylyltransferase
Cluster 6grp_high1_10_10 > 82      4grp_high_8_8 > 35      6grp_total > 81      4grp_total > 38      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 169.7
(3)
P 		153.1
(1.7)
P 		94.6
(-3)
P 		136.8
(0.4)
P 		75
B 126.3
(3)
P 		85.2
(-2.9)
A 		84.4
(-3)
A 		103.2
(-0.3)
P 		42
C 150
(3)
P 		123
(-3)
M 		136.5
(0)
P 		128.9
(-1.7)
A 		27
avr 148.7
(3) 		120.4
(-0.9) 		105.2
(-3) 		123
(-0.5) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 95.2
(-3)
A 		121.8
(-2.5)
P 		231.9
(-0.3)
P 		402.6
(3)
P 		335.8
(1.7)
P 		152.6
(-1.9)
P 		307
B 163.2
(-2.6)
P 		147.1
(-3)
P 		148.3
(-3)
P 		361.4
(2.5)
P 		382.4
(3)
P 		227.6
(-0.9)
P 		235
C 131.1
(-3)
P 		165.5
(-2.4)
P 		166.7
(-2.4)
P 		460.9
(3)
P 		282.7
(-0.2)
P 		164.8
(-2.4)
P 		330
avr 129.8
(-3) 		144.8
(-2.7) 		182.3
(-1.9) 		408.3
(3) 		333.6
(1.4) 		181.7
(-1.9) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 61.8
(3)
P 		33.2
(-1.1)
P 		24.7
(-2.3)
P 		20
(-3)
P 		42
B 40.3
(3)
P 		21
(-2.6)
A 		19.5
(-3)
A 		22
(-2.3)
P 		21
C 49.7
(3)
P 		35.4
(-0.1)
M 		47.6
(2.6)
P 		21.7
(-3)
A 		28
avr 50.6
(3) 		29.9
(-1.2) 		30.6
(-1.1) 		21.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 17.6
(-3)
A 		43.3
(-1.2)
P 		50.5
(-0.7)
P 		102.1
(3)
P 		101.3
(2.9)
P 		37.1
(-1.6)
P 		85
B 56.8
(-2)
P 		49
(-2.3)
P 		36
(-3)
P 		95.7
(0)
P 		155.4
(3)
P 		84.9
(-0.5)
P 		119
C 48.6
(-2.3)
P 		50.5
(-2)
P 		42.4
(-3)
P 		92.7
(3)
P 		91.5
(2.9)
P 		55.2
(-1.5)
P 		50
avr 41
(-3) 		47.6
(-2.5) 		43
(-2.8) 		96.8
(1.5) 		116.1
(3) 		59.1
(-1.6) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16874
Sequence Type Exemplar sequence
Representative Public ID C39D10.3 NCBI
Target Description C39D10.3 /REP_DB=WormBase Gene ID /WP=CE27104 /TR=Q18524 /GB=AAK39211.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=B. subtilis glycerol-3-phosphate cytidylyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076928 NCBI Caenorhabditis elegans C39D10.3 (C39D10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000015647 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7884311:7887321:1 11/11 None
C39D10.3 ENSEMBL cdna:known chromosome:CEL140:X:7884230:7887356:1 gene:C39D10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015634 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7885331-7887320(+) 100.0 100.0
Public Domain and Genome References
Gene Title B. subtilis glycerol-3-phosphate cytidylyltransferase
Ensembl C39D10.3
Entrez Gene 181047 Entrez gene
SwissProt Q18524 EMBL-EBI
WormBase CE36274 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39211 Hypothetical protein C39D10.3 [Caenorhabditis elegans] ref|NP_509329.2| C39D10.3 [Caenorhabditis elegans] 0.0
blast CAE70314 Hypothetical protein CBG16841 [Caenorhabditis briggsae] 1.0E-145
blast T15782 hypothetical protein C39D10.3 - Caenorhabditis elegans 1.0E-120
blast CAE70314 Hypothetical protein CBG16841 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 4.4E-19
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 3.1E-10
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 2.7E-18
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 3.1E-10
Sequence
Target Sequence 
>C. ELEGANS:193855_AT
tcaaaagcgctattcttccgtttgccctggatccgttgagcaacgagcctgtcatatcgg
tgtcccttttcaaacaaaactatacgtttgcacctgtcgtcatcggaaggaaaccgaaag
taacagacaaggttgtttatgttagcggagcgttcgatttatttcatgcggggcacctgt
cttttttggaagcagcgaaagatcttggagactatctgattgttggaattgtgggagatg
atgacgtaaatgaagaaaaaggaacaattttcccggttatgaaccttctcgaaagaacac
tgaacatatcatcactgaaaattgttgatgaagtatttgttggtgttccggcagtgacaa
attccaagtttgtgaatttgattcgagcatcgaaaatcgcagtgtactctgaaacccacc
cacggcggtttgcagactgcacgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAAGCGCTATTCTTCCGTTTGC 129 629 86 Antisense
TTTGCCCTGGATCCGTTGAGCAACG 254 665 106 Antisense
GCAACGAGCCTGTCATATCGGTGTC 356 319 125 Antisense
AAACTATACGTTTGCACCTGTCGTC 279 113 162 Antisense
GGTTGTTTATGTTAGCGGAGCGTTC 161 507 216 Antisense
GCGGAGCGTTCGATTTATTTCATGC 441 293 230 Antisense
TTATTTCATGCGGGGCACCTGTCTT 110 679 244 Antisense
TCCCGGTTATGAACCTTCTCGAAAG 607 595 356 Antisense
GTATTTGTTGGTGTTCCGGCAGTGA 615 453 418 Antisense
ATCGCAGTGTACTCTGAAACCCACC 560 37 481 Antisense
CACGGCGGTTTGCAGACTGCACGTA 608 197 506 Antisense
Sequence Source Affymetrix Proprietary Database