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[193853_at] Lectin C-type domain short and long forms (2 domains)

Description T25E12.7 /REP_DB=WormBase Gene ID /WP=CE16468 /TR=O45821 /GB=CAB04825.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_total > 61      4grp_total > 20      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 25.7
(-3)
A 		54.6
(1.6)
A 		28.8
(-2.5)
A 		63.6
(3)
A 		38
B 42.2
(3)
A 		27.6
(0.1)
A 		12
(-3)
A 		27.8
(0.1)
A 		30
C 25.9
(-0.9)
A 		12.2
(-2.2)
A 		3.7
(-3)
A 		67.2
(3)
A 		64
avr 31.3
(-0.4) 		31.5
(-0.4) 		14.8
(-3) 		52.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 41.4
(1)
A 		7.8
(-3)
A 		57.9
(3)
P 		42.6
(1.2)
A 		34.9
(0.2)
A 		17.3
(-1.9)
A 		50
B 43.8
(3)
A 		17.4
(-2.1)
A 		26.1
(-0.4)
A 		43.4
(2.9)
P 		35
(1.3)
P 		12.6
(-3)
A 		31
C 3.2
(-3)
A 		55.8
(3)
P 		39.4
(1.1)
A 		53.6
(2.7)
A 		51
(2.5)
P 		10
(-2.2)
A 		53
avr 29.5
(-0.1) 		27
(-0.5) 		41.1
(2) 		46.5
(3) 		40.3
(1.9) 		13.3
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.3
(-0.5)
A 		11.9
(3)
A 		7.5
(-3)
A 		9.3
(-0.5)
A 		4
B 13.5
(3)
A 		6.8
(-0.8)
A 		2.8
(-3)
A 		5.9
(-1.3)
A 		11
C 8.6
(1.4)
A 		3.5
(-1.7)
A 		1.3
(-3)
A 		11.3
(3)
A 		10
avr 10.5
(3) 		7.4
(0.2) 		3.9
(-3) 		8.8
(1.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.6
(-0.1)
A 		2.8
(-3)
A 		12.6
(3)
P 		10.8
(1.9)
A 		10.5
(1.7)
A 		4.2
(-2.1)
A 		10
B 15.2
(3)
A 		5.8
(-2.4)
A 		6.3
(-2.1)
A 		11.5
(0.9)
P 		14.2
(2.4)
P 		4.7
(-3)
A 		11
C 1.2
(-3)
A 		17
(3)
P 		10
(0.3)
A 		10.8
(0.6)
A 		16.5
(2.8)
P 		3.3
(-2.2)
A 		16
avr 8
(-0.6) 		8.5
(-0.3) 		9.6
(0.4) 		11
(1.3) 		13.7
(3) 		4.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14069
Sequence Type Exemplar sequence
Representative Public ID T25E12.7 NCBI
Target Description T25E12.7 /REP_DB=WormBase Gene ID /WP=CE16468 /TR=O45821 /GB=CAB04825.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074835 NCBI Caenorhabditis elegans C-type LECtin family member (clec-39) (clec-39) mRNA, complete cds. 11/11 None
GENEFINDER00000017073 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16743082:16744169:1 11/11 None
T25E12.7 ENSEMBL cdna:known chromosome:CEL140:V:16743082:16744169:1 gene:T25E12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017069 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16743081-16744169(+) 94.37 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-39
Ensembl T25E12.7
Entrez Gene 188899 Entrez gene
SwissProt O45821 EMBL-EBI
WormBase CE38636 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04825 Hypothetical protein T25E12.7 [Caenorhabditis elegans] ref|NP_507236.2| C-type LECtin family member (clec-39) [Caenorhabditis elegans] 0.0
blast T25277 hypothetical protein T25E12.7 - Caenorhabditis elegans 1.0E-176
blast T25277 hypothetical protein T25E12.7 - Caenorhabditis elegans 1.0E-165
blast CAB04825 Hypothetical protein T25E12.7 [Caenorhabditis elegans] ref|NP_507236.2| C-type LECtin family member (clec-39) [Caenorhabditis elegans] 1.0E-165
blast CAB04828 Hypothetical protein T25E12.10 [Caenorhabditis elegans] ref|NP_507233.1| C-type LECtin family member (clec-38) [Caenorhabditis elegans] 1.0E-103
blast CAB04828 Hypothetical protein T25E12.10 [Caenorhabditis elegans] ref|NP_507233.1| C-type LECtin family member (clec-38) [Caenorhabditis elegans] 4.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 8.8E-7
Pfam IPR001304 EMBL-EBI C-type lectin 8.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507236.2 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:193853_AT
caggacattgattttctgtggtcgggtctgctgtgtagtgctggagaacccatctcatgc
atatgggacatcgaaaacggatcaacagcgaattatagcaattttgcagatggttttcca
aatattgtctatggaaattgtgtgtacttcataacttctggggatgaagctgggcaatgg
ggtaacgaacaatgcggtcaggttatgaacttcgtttgcgagcttccggcaacttttcaa
ggtaaagatggatgcaagaacaattacgagaagtcatgttatctccgctttgacttgaat
ctcacagtcccacaggcccagaacttttgccttgagaaatgtgcaaacctggtctccatc
cactcggcgaacgaagtccgcttcatcatgactatctacgattttataggcgaaatattg
atcggtgcacttgcaccggcccaggattttatttattggcttgatggtacaccggcaaat
tataacaacttgaaatttttctataattccacttgtgttcatatgacagttgcacctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGACATTGATTTTCTGTGGTCGG 420 209 253 Antisense
GGGTCTGCTGTGTAGTGCTGGAGAA 588 497 276 Antisense
GTGCTGGAGAACCCATCTCATGCAT 334 479 290 Antisense
GTGTGTACTTCATAACTTCTGGGGA 625 487 392 Antisense
GAAGCTGGGCAATGGGGTAACGAAC 475 309 418 Antisense
AATGCGGTCAGGTTATGAACTTCGT 305 165 443 Antisense
TATGAACTTCGTTTGCGAGCTTCCG 382 655 456 Antisense
TTGCACCGGCCCAGGATTTTATTTA 482 685 683 Antisense
TTATTGGCTTGATGGTACACCGGCA 217 677 705 Antisense
TTTTTCTATAATTCCACTTGTGTTC 252 675 748 Antisense
GTGTTCATATGACAGTTGCACCTGG 678 485 767 Antisense
Sequence Source Affymetrix Proprietary Database