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[193850_s_at] Lectin C-type domain short and long forms (2 domains)

Description T25E12.9 /REP_DB=WormBase Gene ID /WP=CE16470 /TR=O45823 /GB=CAB04827.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_total > 13      4grp_total > 42      6grp_cgc > 50      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 7.9
(-3)
A 		50.6
(3)
A 		33
(0.5)
A 		8
(-3)
A 		43
B 19.1
(3)
A 		6.5
(-1.4)
A 		2
(-3)
A 		14
(1.2)
A 		17
C 7.7
(-3)
A 		46.3
(3)
A 		13.5
(-2.1)
A 		29
(0.3)
A 		39
avr 11.6
(-3) 		34.5
(3) 		16.2
(-1.8) 		17
(-1.6) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 41.2
(3)
A 		23
(-0.1)
A 		22.3
(-0.2)
A 		30.2
(1.1)
A 		10.6
(-2.2)
A 		5.9
(-3)
A 		35
B 30.4
(2.3)
A 		34.2
(3)
A 		31.3
(2.5)
A 		1.8
(-3)
A 		15.5
(-0.5)
A 		4
(-2.6)
A 		32
C 9.3
(-2.7)
A 		11.6
(-2.4)
A 		6.6
(-3)
A 		54.5
(3)
A 		6.7
(-3)
A 		7.1
(-2.9)
A 		48
avr 27
(2.5) 		22.9
(1.5) 		20.1
(0.7) 		28.8
(3) 		10.9
(-1.6) 		5.7
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.9
(-2)
A 		11
(3)
A 		8.6
(1.5)
A 		1.2
(-3)
A 		10
B 6.1
(3)
A 		1.6
(-1.8)
A 		0.5
(-3)
A 		3
(-0.3)
A 		6
C 2.6
(-3)
A 		13.3
(3)
A 		4.7
(-1.8)
A 		4.9
(-1.7)
A 		11
avr 3.9
(-2) 		8.6
(3) 		4.6
(-1.3) 		3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.6
(2.5)
A 		8.2
(3)
A 		4.9
(0.1)
A 		7.7
(2.6)
A 		3.2
(-1.4)
A 		1.4
(-3)
A 		7
B 10.6
(2.6)
A 		11.4
(3)
A 		7.6
(0.9)
A 		0.5
(-3)
A 		6.3
(0.2)
A 		1.5
(-2.4)
A 		11
C 3.4
(-1.9)
A 		3.5
(-1.8)
A 		1.7
(-3)
A 		11
(3)
A 		2.2
(-2.7)
A 		2.4
(-2.5)
A 		9
avr 7.2
(2.5) 		7.7
(3) 		4.7
(-0.1) 		6.4
(1.7) 		3.9
(-0.9) 		1.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193850_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13959
Sequence Type Exemplar sequence
Representative Public ID T25E12.9 NCBI
Target Description T25E12.9 /REP_DB=WormBase Gene ID /WP=CE16470 /TR=O45823 /GB=CAB04827.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074834 NCBI Caenorhabditis elegans C-type LECtin family member (clec-29) (clec-29) mRNA, complete cds. 11/11 None
SNAP00000017068 ENSEMBL cdna:SNAP chromosome:CEL140:V:16740346:16741319:-1 11/11 None
GENEFINDER00000017074 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16736482:16741773:-1 10/11 None
T25E12.9 ENSEMBL cdna:known chromosome:CEL140:V:16740254:16741781:-1 gene:T25E12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16740345-16741502(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-29
Ensembl T25E12.9
Entrez Gene 180117 Entrez gene
SwissProt O45823 EMBL-EBI
WormBase CE32503 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04827 Hypothetical protein T25E12.9 [Caenorhabditis elegans] ref|NP_507235.2| C-type LECtin family member (clec-29) [Caenorhabditis elegans] 0.0
blast CAB04828 Hypothetical protein T25E12.10 [Caenorhabditis elegans] ref|NP_507233.1| C-type LECtin family member (clec-38) [Caenorhabditis elegans] 0.0
blast CAB04827 Hypothetical protein T25E12.9 [Caenorhabditis elegans] ref|NP_507235.2| C-type LECtin family member (clec-29) [Caenorhabditis elegans] 1.0E-174
blast CAB04827 Hypothetical protein T25E12.9 [Caenorhabditis elegans] ref|NP_507235.2| C-type LECtin family member (clec-29) [Caenorhabditis elegans] 1.0E-163
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 1.0E-123
blast CAB04422 Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] emb|CAA19439.2| Hypothetical protein Y102A5B.1 [Caenorhabditis elegans] ref|NP_507257.2| C-type LECtin family member (clec-27) [Caenorhabditis elegans] 1.0E-113
blast CAB04740 Hypothetical protein T20B3.12 [Caenorhabditis elegans] ref|NP_507254.2| C-type LECtin family member (clec-26) [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 6.4E-13
Pfam IPR001304 EMBL-EBI C-type lectin 6.4E-13
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-6
Pfam IPR001304 EMBL-EBI C-type lectin 4.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507235.2 1 34-56
T25E12.9 1 34-56
GENEFINDER00000017074 2 34-56,391-413
Sequence
Target Sequence 
>C. ELEGANS:193850_S_AT
tggactgggttgatctgtgttgggaagaactcattttcgtgtacttgggatgtgaatagt
ggaacagcagccgtgtacaataactttgctgaaggttatccaaataacgtgtatggagat
tgcattcactatatgactactggaacgcaagctggacaatgggcaagcggatcctgtaac
gagactatgagctttgtgtgtgagctaccagctacgatttatgatgacacctgcgactac
aactacgacaggtactgctacacgcctcattacttcataaaacactcgagtgaggctcag
caattctgtgcaggattatgttccaactcggtatcgattcattcgggaaacgagaaccga
ttcgtgctgacactctacttatacacaaactcgtcaattttaattggtggaattgctcca
tcttacgattttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACTGGGTTGATCTGTGTTGGGA 145 549 364 Antisense
GGGCAAGCGGATCCTGTAACGAGAC 272 493 524 Antisense
GAGCTACCAGCTACGATTTATGATG 92 389 565 Antisense
ATGATGACACCTGCGACTACAACTA 124 45 584 Antisense
CTACGACAGGTACTGCTACACGCCT 572 225 606 Antisense
CTACACGCCTCATTACTTCATAAAA 406 227 621 Antisense
GAGGCTCAGCAATTCTGTGCAGGAT 474 405 655 Antisense
GGATTATGTTCCAACTCGGTATCGA 459 509 676 Antisense
AGAACCGATTCGTGCTGACACTCTA 449 73 716 Antisense
GACACTCTACTTATACACAAACTCG 493 367 732 Antisense
GGAATTGCTCCATCTTACGATTTTG 482 533 772 Antisense
Sequence Source Affymetrix Proprietary Database