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[193849_at] dihydroflavonol-4-reductase (maize, petunia, tomato)

Description F13D11.4 /REP_DB=WormBase Gene ID /WP=CE04390 /TR=Q19391 /GB=AAA81703.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=dihydroflavonol-4-reductase (maize, petunia, tomato)
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 61      4grp_highest_8_8 > 12      4grp_high_8_8 > 30      6grp_highest_nonorm > 44      6grp_total > 61      4grp_total > 33      6grp_highest_sub > 03      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 933
1 2 3 4 range
A 785.2
(-3)
P 		1416.6
(1.7)
P 		1592
(3)
P 		1338.4
(1.1)
P 		807
B 901.3
(-3)
P 		1406.9
(1.3)
P 		1402.4
(1.3)
P 		1607.8
(3)
P 		707
C 811.9
(-3)
P 		1321.7
(0.4)
P 		1372.8
(0.7)
P 		1718.3
(3)
P 		906
avr 832.8
(-3) 		1381.7
(1.6) 		1455.7
(2.2) 		1554.8
(3) 		722

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1496
1 2 3 4 5 6 range
A 1536.2
(-1.4)
P 		1599.9
(-1.1)
P 		2428.9
(3)
P 		2397.1
(2.8)
P 		1425.5
(-1.9)
P 		1205.1
(-3)
P 		1224
B 1534.8
(-2)
P 		1390.4
(-2.6)
P 		2701.2
(3)
P 		2386.6
(1.7)
P 		1514.9
(-2)
P 		1290
(-3)
P 		1411
C 1418.7
(-2.5)
P 		1568.7
(-1.8)
P 		2569.2
(2.9)
P 		2595.6
(3)
P 		1323.1
(-3)
P 		1413.9
(-2.6)
P 		1273
avr 1496.6
(-2.1) 		1519.7
(-2) 		2566.4
(3) 		2459.8
(2.5) 		1421.2
(-2.4) 		1303
(-3) 		1263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 285.9
(-0.5)
P 		307.5
(0)
P 		416.2
(3)
P 		195.9
(-3)
P 		220
B 287.4
(-3)
P 		347.5
(3)
P 		325
(0.8)
P 		342.6
(2.5)
P 		60
C 268.8
(-3)
P 		380
(0.2)
P 		478.5
(3)
P 		289.7
(-2.4)
P 		210
avr 280.7
(-2.8) 		345
(0.2) 		406.6
(3) 		276.1
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 283.2
(-3)
P 		569
(2.3)
P 		529
(1.5)
P 		608
(3)
P 		430.1
(-0.3)
P 		293.4
(-2.8)
P 		325
B 534
(-0.8)
P 		462.8
(-3)
P 		655.9
(3)
P 		632.1
(2.3)
P 		615.5
(1.7)
P 		481
(-2.4)
P 		193
C 525.9
(-0.4)
P 		478.7
(-1.7)
P 		653.9
(3)
P 		522
(-0.5)
P 		428.1
(-3)
P 		473.3
(-1.8)
P 		226
avr 447.7
(-2) 		503.5
(-0.3) 		612.9
(3) 		587.4
(2.2) 		491.2
(-0.7) 		415.9
(-3) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16368
Sequence Type Exemplar sequence
Representative Public ID F13D11.4 NCBI
Target Description F13D11.4 /REP_DB=WormBase Gene ID /WP=CE04390 /TR=Q19391 /GB=AAA81703.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=dihydroflavonol-4-reductase (maize, petunia, tomato)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076577 NCBI Caenorhabditis elegans F13D11.4 (F13D11.4) mRNA, complete cds. 11/11 None
SNAP00000005819 ENSEMBL cdna:SNAP chromosome:CEL140:X:5832009:5833157:-1 11/11 None
GENEFINDER00000005823 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5832009:5834763:-1 11/11 None
F13D11.4 ENSEMBL cdna:known chromosome:CEL140:X:5831886:5834763:-1 gene:F13D11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5832008-5836221(-) 96.02 100.0
Public Domain and Genome References
Gene Title dihydroflavonol-4-reductase (maize, petunia, tomato)
Ensembl F13D11.4
Entrez Gene 184416 Entrez gene
SwissProt Q19391 EMBL-EBI
WormBase CE37632 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264553_S_AT cinnamyl-alcohol dehydrogenase family / CAD family at
ATGENOME1:14041_AT cinnamyl-alcohol dehydrogenase family / CAD family at
Protein Similarities
Method ID Description E-Value
blast AAA81703 Hypothetical protein F13D11.4 [Caenorhabditis elegans] ref|NP_508978.3| F13D11.4 [Caenorhabditis elegans] 0.0
blast CAE68808 Hypothetical protein CBG14760 [Caenorhabditis briggsae] 0.0
blast AAA81703 Hypothetical protein F13D11.4 [Caenorhabditis elegans] ref|NP_508978.3| F13D11.4 [Caenorhabditis elegans] 6.0E-90
blast CAE68808 Hypothetical protein CBG14760 [Caenorhabditis briggsae] 3.0E-88
blast XP_794499 PREDICTED: similar to oxidoreductase (XG452) [Strongylocentrotus purpuratus] 1.0E-72
Sequence
Target Sequence 
>C. ELEGANS:193849_AT
atcaatccaacgctagtattcggcccagcttacattaccgagcaaggagcaagtattact
ctgatgcgaaaattcatgaatggagaaatgccagctgcaccgccactcaacatgcctatc
gtcgatgtgcgtgatgtcgcgctagctcactttgaagccatgcgacgacccgaatcagat
aacgaacgaattttggtaattaaaatggttaaatgttactggatccccagatttacagct
ccatacttttttgtgagactctatgcactctttgatcctgaaacaaaagcaagtcttcct
cgtctatgccaagaagtcaagtttgataactcaaaggctcaacgtttgctgggaatgacc
atgcgcgatagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATCCAACGCTAGTATTCGGCC 99 27 709 Antisense
TTCGGCCCAGCTTACATTACCGAGC 276 693 727 Antisense
CCACTCAACATGCCTATCGTCGATG 359 275 811 Antisense
GCCTATCGTCGATGTGCGTGATGTC 645 281 822 Antisense
TCGCGCTAGCTCACTTTGAAGCCAT 81 597 845 Antisense
TGGATCCCCAGATTTACAGCTCCAT 129 551 928 Antisense
ACAGCTCCATACTTTTTTGTGAGAC 167 109 943 Antisense
ACTCTATGCACTCTTTGATCCTGAA 248 101 966 Antisense
AAAAGCAAGTCTTCCTCGTCTATGC 110 133 993 Antisense
AAAGGCTCAACGTTTGCTGGGAATG 498 121 1041 Antisense
GCTGGGAATGACCATGCGCGATAGC 559 293 1056 Antisense
Sequence Source Affymetrix Proprietary Database