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[193848_s_at] C. elegans protein C26E6.9; E. coli malate synthase G

Description W01C8.3 /REP_DB=WormBase Gene ID /WP=CE26018 /TR=Q9GYG8 /GB=AAG00027.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C. elegans protein C26E6.9; E. coli malate synthase G
Cluster 6grp_high1_10_10 > 15      4grp_high_8_8 > 43      6grp_total > 04      4grp_total > 52      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 204.5
(3)
P 		194.2
(2.4)
P 		175.5
(1.4)
M 		94.2
(-3)
A 		110
B 206.7
(3)
P 		201
(2.7)
P 		203.8
(2.8)
P 		94.9
(-3)
M 		112
C 207.3
(1.8)
P 		221.6
(3)
P 		165.2
(-1.9)
P 		152.5
(-3)
P 		69
avr 206.2
(3) 		205.6
(3) 		181.5
(1.4) 		113.9
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 223.8
(3)
P 		167.7
(-0)
P 		112.6
(-3)
P 		118.4
(-2.7)
P 		169
(0)
M 		129.4
(-2.1)
P 		111
B 233.5
(1.6)
P 		263.7
(3)
P 		135.9
(-3)
P 		189.1
(-0.5)
P 		164.1
(-1.7)
P 		150.3
(-2.3)
P 		128
C 229.6
(3)
P 		225.3
(2.7)
P 		201.5
(1.2)
P 		222.5
(2.6)
P 		134.7
(-3)
P 		150
(-2)
P 		95
avr 229
(3) 		218.9
(2.3) 		150
(-2.5) 		176.7
(-0.7) 		155.9
(-2.1) 		143.2
(-3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 74.5
(3)
P 		42.2
(-0.2)
P 		45.9
(0.2)
M 		13.8
(-3)
A 		61
B 65.9
(3)
P 		49.6
(0.9)
P 		47.2
(0.5)
P 		20.2
(-3)
M 		46
C 68.6
(3)
P 		63.7
(2.3)
P 		57.6
(1.5)
P 		25.7
(-3)
P 		43
avr 69.7
(3) 		51.8
(0.8) 		50.2
(0.7) 		19.9
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 41.2
(-0.2)
P 		59.7
(3)
P 		24.5
(-3)
P 		30
(-2.1)
P 		51
(1.5)
M 		31.5
(-1.8)
P 		35
B 81.3
(2.3)
P 		87.8
(3)
P 		33
(-3)
P 		50.1
(-1.1)
P 		66.7
(0.7)
P 		56.1
(-0.5)
P 		55
C 85.1
(3)
P 		68.8
(0.6)
P 		51.3
(-1.9)
P 		44.7
(-2.8)
P 		43.6
(-3)
P 		50.2
(-2)
P 		42
avr 69.2
(2.5) 		72.1
(3) 		36.3
(-3) 		41.6
(-2.1) 		53.8
(-0.1) 		45.9
(-1.4) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193848_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16282
Sequence Type Exemplar sequence
Representative Public ID W01C8.3 NCBI
Target Description W01C8.3 /REP_DB=WormBase Gene ID /WP=CE26018 /TR=Q9GYG8 /GB=AAG00027.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C. elegans protein C26E6.9; E. coli malate synthase G
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076555 NCBI Caenorhabditis elegans W01C8.3 (W01C8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000032384 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5675619:5680183:-1 11/11 None
SNAP00000032375 ENSEMBL cdna:SNAP chromosome:CEL140:X:5676340:5680183:-1 11/11 None
W01C8.3 ENSEMBL cdna:known chromosome:CEL140:X:5675204:5680183:-1 gene:W01C8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5675444-5680156(-) 100.0 100.0
Public Domain and Genome References
Gene Title C. elegans protein C26E6.9; E. coli malate synthase G
Ensembl W01C8.3
Entrez Gene 180834 Entrez gene
SwissProt Q9GYG8 EMBL-EBI
WormBase CE37158 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508956 W01C8.3 [Caenorhabditis elegans] gb|AAG00027.3| Hypothetical protein W01C8.3 [Caenorhabditis elegans] 0.0
blast T26044 hypothetical protein W01C8.3 - Caenorhabditis elegans 0.0
blast NP_494371 K12H6.11 [Caenorhabditis elegans] gb|AAF39940.1| Hypothetical protein K12H6.11 [Caenorhabditis elegans] 6.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.9E-35
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.9E-35
Sequence
Target Sequence 
>C. ELEGANS:193848_S_AT
cactacgtcgttgcggtctgagaagcgattatagctcagtgttgaactcgcctgcttcca
caagtcaggagtcaacaggtatgcgtgatacacagcgtctgaacaaggttctatccaaaa
ataacattggcgaactggaatctccccgcctaaatgggacaagagtgctatcaccacccc
gaaccagacatcaaatctcgaatgcaatcgattcggatgcattcaacgatatgccagtgc
tcactcaggaaccagttcaagaacgtcgaatgattgcccaggtatttgagatcccacgga
aaacaaccgcttataatcaaccctcttcttctaatagccagcaacacggacaattccaag
tgtgttcaaatggttcactgggtttttttcatccacaaatctatcaatcaatgatgactc
cacccggaatcgtgccacacgccgtcattagtaactcagctcttggttatagttcgtatc
aagcatacattccgaataataacaattctgagcaacagtatccttccacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTACGTCGTTGCGGTCTGAGAAG 399 197 2153 Antisense
ATAGCTCAGTGTTGAACTCGCCTGC 257 23 2183 Antisense
CTCGCCTGCTTCCACAAGTCAGGAG 399 233 2199 Antisense
CATTGGCGAACTGGAATCTCCCCGC 652 215 2277 Antisense
GAATCTCCCCGCCTAAATGGGACAA 285 327 2290 Antisense
TCAACGATATGCCAGTGCTCACTCA 603 629 2375 Antisense
GAACGTCGAATGATTGCCCAGGTAT 54 349 2413 Antisense
TGCCCAGGTATTTGAGATCCCACGG 373 583 2427 Antisense
ATAATCAACCCTCTTCTTCTAATAG 525 25 2465 Antisense
ACACGCCGTCATTAGTAACTCAGCT 7 109 2589 Antisense
TCTGAGCAACAGTATCCTTCCACAT 411 609 2659 Antisense
Sequence Source Affymetrix Proprietary Database