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[193847_at]

Description F57C7.1A /REP_DB=WormBase Gene ID /WP=CE05993 /TR=Q20947 /GB=CAA93473.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=female sterile homeotic protein (Bromodomain protein)
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 61      6grp_total > 01      4grp_total > 38      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 521.4
(3)
P 		412.7
(-0)
P 		304.7
(-3)
P 		360.2
(-1.5)
P 		217
B 708.8
(3)
P 		394.9
(-2.5)
P 		368.6
(-3)
P 		385.4
(-2.7)
P 		340
C 517.4
(3)
P 		373.4
(-1.4)
P 		322
(-3)
P 		379.1
(-1.2)
P 		195
avr 582.5
(3) 		393.7
(-1.5) 		331.8
(-3) 		374.9
(-2) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 409.6
(-1.1)
P 		687.4
(3)
P 		336.7
(-2.2)
P 		283.2
(-3)
P 		321.7
(-2.4)
P 		402.5
(-1.2)
P 		404
B 432.8
(-0.5)
P 		645
(3)
P 		476.1
(0.2)
P 		281.3
(-3)
P 		319.2
(-2.4)
P 		353.9
(-1.8)
P 		364
C 503.5
(1.5)
P 		572.8
(3)
P 		377.9
(-1.3)
P 		303.2
(-3)
P 		331.5
(-2.4)
P 		322.7
(-2.6)
P 		270
avr 448.6
(-0.2) 		635.1
(3) 		396.9
(-1.1) 		289.2
(-3) 		324.1
(-2.4) 		359.7
(-1.8) 		346
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 189.8
(3)
P 		89.6
(-1.4)
P 		79.7
(-1.8)
P 		52.7
(-3)
P 		137
B 226
(3)
P 		97.5
(-2.4)
P 		85.4
(-2.9)
P 		82.1
(-3)
P 		144
C 171.3
(3)
P 		107.3
(-0.6)
P 		112.2
(-0.3)
P 		63.9
(-3)
P 		107
avr 195.7
(3) 		98.1
(-1.5) 		92.4
(-1.8) 		66.2
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 75.5
(-2.9)
P 		244.5
(3)
P 		73.3
(-2.9)
P 		71.8
(-3)
P 		97.1
(-2.1)
P 		98
(-2.1)
P 		173
B 150.6
(0.3)
P 		214.7
(3)
P 		115.6
(-1.2)
P 		74.5
(-3)
P 		129.7
(-0.6)
P 		132
(-0.5)
P 		140
C 186.6
(3)
P 		174.8
(2.4)
P 		96.2
(-1.3)
P 		61
(-3)
P 		107.3
(-0.8)
P 		108
(-0.8)
P 		126
avr 137.6
(-0.1) 		211.3
(3) 		95
(-1.9) 		69.1
(-3) 		111.4
(-1.2) 		112.7
(-1.2) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16264
Sequence Type Exemplar sequence
Representative Public ID F57C7.1A NCBI
Target Description F57C7.1A /REP_DB=WormBase Gene ID /WP=CE05993 /TR=Q20947 /GB=CAA93473.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=female sterile homeotic protein (Bromodomain protein)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077369(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077369 NCBI Caenorhabditis elegans F57C7.1a (F57C7.1) mRNA, complete cds. 10/11 A 
GENEFINDER00000028647 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10569199:10580662:1 10/11 None
SNAP00000028641 ENSEMBL cdna:SNAP chromosome:CEL140:X:10571697:10575145:1 11/11 None
F57C7.1b ENSEMBL cdna:known chromosome:CEL140:X:10569199:10575635:1 gene:F57C7.1 9/11 None
F57C7.1a ENSEMBL cdna:known chromosome:CEL140:X:10569199:10575644:1 gene:F57C7.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181257 2 1 NM_077369 174775_at (11), 193847_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10569198-10575145(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57C7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93473 Hypothetical protein F57C7.1a [Caenorhabditis elegans] ref|NP_509770.2| F57C7.1a [Caenorhabditis elegans] 0.0
blast CAA93475 Hypothetical protein F57C7.1b [Caenorhabditis elegans] ref|NP_509771.1| F57C7.1b [Caenorhabditis elegans] 0.0
blast CAE60803 Hypothetical protein CBG04495 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001990 EMBL-EBI Chromogranin/secretogranin 0.02
Pfam IPR001487 EMBL-EBI Bromodomain 8.2E-34
Pfam IPR001487 EMBL-EBI Bromodomain 4.3E-37
Pfam IPR001487 EMBL-EBI Bromodomain 5.6E-37
Pfam IPR006153 EMBL-EBI Sodium/hydrogen exchanger 1.0E-126
Pfam IPR001990 EMBL-EBI Chromogranin/secretogranin 0.02
Pfam IPR001487 EMBL-EBI Bromodomain 5.5E-5
Pfam IPR001487 EMBL-EBI Bromodomain 4.3E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028647 11 1262-1281,1302-1321,1336-1355,1450-1472,1485-1504,1550-1572,1600-1622,1643-1665,1675-1697,1710-1729,1739-1761
Sequence
Target Sequence 
>C. ELEGANS:193847_AT
gattctgagccaaaaccacaggccaagaaacctgagccgccacaaaagaaagttgcaaaa
aaaccagctccacagcaaaaaaagaaagccccactttcaattttggatgaacttcttccg
gacacacccgagaaaaaaccagtgatggcctctgtcccaactactagtggatctgcacgg
caacttccaccagactcatatcaaaagccatctcaaatttcggaagccgagttgaaagct
caaaaggaacaggagcacaatgctgctttgcaacgaagggaagaggtagctcgtcgtctc
cgagctcttgaagaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTGAGCCAAAACCACAGGCCA 106 433 3379 Antisense
CAGGCCAAGAAACCTGAGCCGCCAC 199 209 3397 Antisense
TTGGATGAACTTCTTCCGGACACAC 157 707 3481 Antisense
AAAAACCAGTGATGGCCTCTGTCCC 614 129 3512 Antisense
CCTCTGTCCCAACTACTAGTGGATC 639 267 3527 Antisense
CTAGTGGATCTGCACGGCAACTTCC 237 225 3542 Antisense
CAACTTCCACCAGACTCATATCAAA 269 189 3559 Antisense
AGCCATCTCAAATTTCGGAAGCCGA 31 85 3584 Antisense
GGAGCACAATGCTGCTTTGCAACGA 204 521 3630 Antisense
AGGGAAGAGGTAGCTCGTCGTCTCC 232 55 3655 Antisense
TCGTCTCCGAGCTCTTGAAGACCAA 248 603 3672 Antisense
Sequence Source Affymetrix Proprietary Database