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[193845_s_at]

Description F57C7.1B /REP_DB=WormBase Gene ID /WP=CE18761 /TR=Q20948 /GB=CAA93475.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=female sterile homeotic protein (Bromodomain protein)
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 35      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 26      4grp_total > 47      6grp_highest_sub > 01_02      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 492
1 2 3 4 range
A 887.7
(3)
P 		449.4
(-2.9)
P 		441.9
(-3)
P 		513.2
(-2)
P 		446
B 751.3
(3)
P 		535.7
(-0.6)
P 		395.7
(-3)
P 		479.4
(-1.6)
P 		356
C 772.7
(3)
P 		510.8
(-1.6)
P 		430.3
(-3)
P 		451.4
(-2.6)
P 		342
avr 803.9
(3) 		498.6
(-1.8) 		422.6
(-3) 		481.3
(-2.1) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 617
(1.6)
P 		711.1
(3)
P 		320.6
(-3)
P 		361.6
(-2.4)
P 		438.2
(-1.2)
P 		491.9
(-0.4)
P 		391
B 673.8
(2.1)
P 		725.9
(3)
P 		570
(0.4)
P 		398.3
(-2.6)
P 		372.7
(-3)
P 		461.9
(-1.5)
P 		353
C 570.3
(1.3)
P 		663.6
(3)
P 		500.9
(0.1)
P 		325.7
(-3)
P 		355.1
(-2.5)
P 		399.8
(-1.7)
P 		338
avr 620.4
(1.6) 		700.2
(3) 		463.8
(-1.2) 		361.9
(-3) 		388.7
(-2.5) 		451.2
(-1.4) 		338
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 323.2
(3)
P 		97.6
(-2.5)
P 		115.5
(-2)
P 		75.1
(-3)
P 		248
B 239.6
(3)
P 		132.3
(-1.4)
P 		91.7
(-3)
P 		102.2
(-2.6)
P 		148
C 255.8
(3)
P 		146.8
(-0.6)
P 		150
(-0.5)
P 		76.1
(-3)
P 		180
avr 272.9
(3) 		125.6
(-1.7) 		119.1
(-1.9) 		84.5
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 113.7
(-1.6)
P 		252.9
(3)
P 		69.8
(-3)
P 		91.7
(-2.3)
P 		132.2
(-1)
P 		119.8
(-1.4)
P 		183
B 234.5
(2.7)
P 		241.6
(3)
P 		138.4
(-1.5)
P 		105.5
(-3)
P 		151.4
(-1)
P 		172.3
(-0.1)
P 		136
C 211.4
(3)
P 		202.5
(2.6)
P 		127.5
(-0.5)
P 		65.5
(-3)
P 		114.9
(-1)
P 		133.8
(-0.2)
P 		146
avr 186.5
(1.1) 		232.3
(3) 		111.9
(-2) 		87.6
(-3) 		132.8
(-1.1) 		142
(-0.7) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193845_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16242
Sequence Type Exemplar sequence
Representative Public ID F57C7.1B NCBI
Target Description F57C7.1B /REP_DB=WormBase Gene ID /WP=CE18761 /TR=Q20948 /GB=CAA93475.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=female sterile homeotic protein (Bromodomain protein)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077369(11), NM_077370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077369 NCBI Caenorhabditis elegans F57C7.1a (F57C7.1) mRNA, complete cds. 11/11 A 
NM_077370 NCBI Caenorhabditis elegans F57C7.1b (F57C7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000028647 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10569199:10580662:1 11/11 None
SNAP00000028641 ENSEMBL cdna:SNAP chromosome:CEL140:X:10571697:10575145:1 11/11 None
F57C7.1b ENSEMBL cdna:known chromosome:CEL140:X:10569199:10575635:1 gene:F57C7.1 11/11 None
F57C7.1a ENSEMBL cdna:known chromosome:CEL140:X:10569199:10575644:1 gene:F57C7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10569198-10574250(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57C7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93473 Hypothetical protein F57C7.1a [Caenorhabditis elegans] ref|NP_509770.2| F57C7.1a [Caenorhabditis elegans] 0.0
blast CAA93475 Hypothetical protein F57C7.1b [Caenorhabditis elegans] ref|NP_509771.1| F57C7.1b [Caenorhabditis elegans] 0.0
blast CAE60803 Hypothetical protein CBG04495 [Caenorhabditis briggsae] 0.0
blast CAA93476 Hypothetical protein F57C7.2a [Caenorhabditis elegans] ref|NP_001024720.1| Na/H eXchanger family member (nhx-5) [Caenorhabditis elegans] gb|AAM18106.1| putative Na-H exchanger isoform 5a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001990 EMBL-EBI Chromogranin/secretogranin 0.02
Pfam IPR001487 EMBL-EBI Bromodomain 8.2E-34
Pfam IPR001487 EMBL-EBI Bromodomain 4.3E-37
Pfam IPR001487 EMBL-EBI Bromodomain 5.6E-37
Pfam IPR006153 EMBL-EBI Sodium/hydrogen exchanger 1.0E-126
Pfam IPR001990 EMBL-EBI Chromogranin/secretogranin 0.02
Pfam IPR001487 EMBL-EBI Bromodomain 5.5E-5
Pfam IPR001487 EMBL-EBI Bromodomain 4.3E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028647 11 1262-1281,1302-1321,1336-1355,1450-1472,1485-1504,1550-1572,1600-1622,1643-1665,1675-1697,1710-1729,1739-1761
Sequence
Target Sequence 
>C. ELEGANS:193845_S_AT
tgtacattactccgatcttgcgcattattcaaattggacaccacaacactggaaaaacca
ttacgtcccttcgttccctttgtgaggaggaaattgactttaacgacgtttctgacgact
tagtcatcgagctgttggattatcttgagatgattcaaaaggacaaagcgaaggctgagc
aagttagacaggagcttgaagtaaaagcaaagttctatggttttgaagcatacgacaata
aacttggaacaatccccaaaactcggaacatgccgcctccattacaacatcgtatgcgct
ccgactcgccatctccatcggcttcgcgtaccggcaaccaatcatctgattcggattctg
catcggatgattcatcggatgatgagccaagccgtagcaacagtaatgtagctggtcctc
gccgtgccctcgagttgagtggaaactcatccagtgcgtctactccagcagggcccagca
aagctcagcctgcagttgtccgtccgtcgtcaaaatcggtggcttcaaagccggcataca
caaagcggacgttgtcagaaagctcgagttcgtcggacagcaacggttcatcgtcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACATTACTCCGATCTTGCGCAT 16 559 2648 Antisense
GACGACTTAGTCATCGAGCTGTTGG 542 379 2761 Antisense
CGTACCGGCAACCAATCATCTGATT 594 245 2974 Antisense
GGATGATGAGCCAAGCCGTAGCAAC 124 511 3024 Antisense
AACAGTAATGTAGCTGGTCCTCGCC 15 137 3046 Antisense
CCGTGCCCTCGAGTTGAGTGGAAAC 330 265 3069 Antisense
GTGGAAACTCATCCAGTGCGTCTAC 187 491 3086 Antisense
AGCAAAGCTCAGCCTGCAGTTGTCC 151 77 3124 Antisense
GTCCGTCCGTCGTCAAAATCGGTGG 565 379 3145 Antisense
GAAAGCTCGAGTTCGTCGGACAGCA 365 359 3205 Antisense
GGACAGCAACGGTTCATCGTCGGAC 613 525 3222 Antisense
Sequence Source Affymetrix Proprietary Database