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[193844_at] Basic region plus leucine zipper transcription factors

Description C34D1.5 /REP_DB=WormBase Gene ID /WP=CE18541 /TR=Q9XTJ2 /GB=CAA18350.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Basic region plus leucine zipper transcription factors
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 85      6grp_total > 68      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1143
1 2 3 4 range
A 652
(-0.3)
P 		313.3
(-2.6)
P 		256.5
(-3)
P 		1136.9
(3)
P 		880
B 703.5
(-0.5)
P 		306.4
(-2.6)
P 		235.4
(-3)
P 		1378.8
(3)
P 		1143
C 603.7
(-0.6)
P 		373.4
(-2.2)
P 		258.3
(-3)
P 		1121.2
(3)
P 		863
avr 653.1
(-0.5) 		331
(-2.5) 		250.1
(-3) 		1212.3
(3) 		962

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 599.4
(-2.7)
P 		573.2
(-3)
P 		666.7
(-1.9)
P 		676.6
(-1.7)
P 		656.4
(-2)
P 		1064.5
(3)
P 		491
B 739.6
(-1.1)
P 		642.3
(-2.3)
P 		582.2
(-3)
P 		704.8
(-1.5)
P 		581.8
(-3)
P 		1081
(3)
P 		499
C 757.9
(-0.6)
P 		640.6
(-1.6)
P 		490.2
(-3)
P 		792.4
(-0.3)
P 		674.4
(-1.3)
P 		1149.7
(3)
P 		660
avr 699
(-1.6) 		618.7
(-2.5) 		579.7
(-3) 		724.6
(-1.3) 		637.5
(-2.3) 		1098.4
(3) 		519
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 237.4
(3)
P 		68
(-3)
P 		67.1
(-3)
P 		166.4
(0.5)
P 		170
B 224.3
(1.3)
P 		75.7
(-2.5)
P 		54.5
(-3)
P 		293.8
(3)
P 		239
C 199.9
(3)
P 		107.4
(-2.1)
P 		90
(-3)
P 		189
(2.4)
P 		110
avr 220.5
(3) 		83.7
(-2.5) 		70.5
(-3) 		216.4
(2.8) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 110.5
(-3)
P 		203.9
(0.8)
P 		145.2
(-1.6)
P 		171.6
(-0.5)
P 		198.1
(0.5)
P 		259.2
(3)
P 		149
B 257.3
(-0.3)
P 		213.8
(-1.3)
P 		141.4
(-3)
P 		186.7
(-2)
P 		236.4
(-0.8)
P 		403.1
(3)
P 		262
C 280.9
(0.6)
P 		195.5
(-1.4)
P 		124.8
(-3)
P 		159.4
(-2.2)
P 		218.2
(-0.8)
P 		384.9
(3)
P 		260
avr 216.2
(-0.8) 		204.4
(-1.1) 		137.1
(-3) 		172.6
(-2) 		217.6
(-0.7) 		349.1
(3) 		212
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13081
Sequence Type Exemplar sequence
Representative Public ID C34D1.5 NCBI
Target Description C34D1.5 /REP_DB=WormBase Gene ID /WP=CE18541 /TR=Q9XTJ2 /GB=CAA18350.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Basic region plus leucine zipper transcription factors
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073891 NCBI Caenorhabditis elegans C34D1.5 (C34D1.5) mRNA, complete cds. 11/11 None
C34D1.5 ENSEMBL cdna:known chromosome:CEL140:V:13271041:13272411:1 gene:C34D1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028632 5/11 Cross Hyb Matching Probes None
GENEFINDER00000028638 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13271040-13272411(+) 100.0 100.0
Public Domain and Genome References
Gene Title Basic region plus leucine zipper transcription factors
Ensembl C34D1.5
Entrez Gene 183204 Entrez gene
SwissProt Q9XTJ2 EMBL-EBI
WormBase CE18541 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01492 Hypothetical protein C34D1.5 [Caenorhabditis elegans] emb|CAA18350.1| Hypothetical protein C34D1.5 [Caenorhabditis elegans] ref|NP_506292.1| C34D1.5 [Caenorhabditis elegans] 1.0E-105
blast CAE64642 Hypothetical protein CBG09406 [Caenorhabditis briggsae] 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.0E-6
Sequence
Target Sequence 
>C. ELEGANS:193844_AT
gatttaccatccgatgagccttctccaaaatatcaaaaactgaacaaaaatattttttca
cctttatctccaacttttgaattgaaatttcaatccaaacttcgcgtaagcggaaattca
acaagtagtacaacatccgacgattccgatgatgaatctttgcatagatcaaatcaactt
aaacatctagaaactttattcaaagaatcaattttacgtacatcattttcccgacctggt
gtttcgaacacatcttgtgatgaaaaattagacttggtatccgaagatgagaaaaaacga
ttaagaaacactgaagcagcaagacggtgccgagaaaagatcaagagaaaaactgatgat
ttagaaacagaattgacaagattgactgctcgtaacgaagtaatgaaccaacaccgtatt
cgtcttttgtcacaggtagaggaacaaatgagaatgttggaaaatataaagagccgaaac
ccagaacttgaagccgaaattagatatgaagccaagaaaattgtggacacgtacacacat
caagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTACCATCCGATGAGCCTTCTC 416 427 58 Antisense
TTTCACCTTTATCTCCAACTTTTGA 603 667 113 Antisense
ATTTCAATCCAAACTTCGCGTAAGC 504 13 144 Antisense
GTAGTACAACATCCGACGATTCCGA 550 455 182 Antisense
CAATTTTACGTACATCATTTTCCCG 697 167 266 Antisense
TTCCCGACCTGGTGTTTCGAACACA 624 693 285 Antisense
GACAAGATTGACTGCTCGTAACGAA 580 361 432 Antisense
GAACCAACACCGTATTCGTCTTTTG 522 343 462 Antisense
CGTATTCGTCTTTTGTCACAGGTAG 503 247 472 Antisense
GAGCCGAAACCCAGAACTTGAAGCC 103 375 528 Antisense
GTGGACACGTACACACATCAAGTGG 332 491 580 Antisense
Sequence Source Affymetrix Proprietary Database