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[193843_s_at]

Description F07A11.6A /REP_DB=WormBase Gene ID /WP=CE23630 /TR=Q19135 /GB=CAB54501.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=RNA recognition motif. (aka RRM, RBD, or RNP domain)
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 81      6grp_total > 61      4grp_total > 09      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 577
1 2 3 4 range
A 229.4
(-3)
P 		300
(-1.6)
P 		264.8
(-2.3)
P 		527.2
(3)
P 		298
B 267.9
(-3)
P 		288.7
(-2.6)
P 		355.9
(-1.5)
P 		615.5
(3)
P 		348
C 177.1
(-3)
P 		268.1
(-2.1)
P 		213.8
(-2.6)
P 		754.2
(3)
P 		577
avr 224.8
(-3) 		285.6
(-2.1) 		278.2
(-2.2) 		632.3
(3) 		408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 184.9
(-3)
P 		236.8
(-1)
P 		337.9
(3)
P 		308.4
(1.8)
P 		248.1
(-0.5)
P 		239.6
(-0.9)
P 		153
B 251.2
(-2.3)
P 		253.1
(-2.2)
P 		358.2
(3)
P 		355.1
(2.8)
P 		236.3
(-3)
P 		272.6
(-1.2)
P 		122
C 168.1
(-3)
P 		286.1
(0.7)
P 		275.7
(0.3)
P 		361.5
(3)
P 		247.5
(-0.5)
P 		237.8
(-0.8)
P 		193
avr 201.4
(-3) 		258.7
(-0.5) 		323.9
(2.2) 		341.7
(3) 		244
(-1.2) 		250
(-0.9) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 83.5
(3)
P 		65.1
(-3)
P 		69.2
(-1.7)
P 		77.2
(0.9)
P 		18
B 85.4
(-1.6)
P 		71.3
(-3)
P 		82.5
(-1.9)
P 		131.2
(3)
P 		60
C 58.6
(-3)
P 		77.1
(-1.4)
P 		74.5
(-1.6)
P 		127.2
(3)
P 		69
avr 75.8
(-2.3) 		71.2
(-3) 		75.4
(-2.4) 		111.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 34.1
(-3)
P 		84.2
(3)
P 		73.6
(1.7)
P 		78.2
(2.3)
P 		74.9
(1.9)
P 		58.3
(-0.1)
P 		50
B 87.4
(-1.9)
P 		84.2
(-3)
P 		87
(-2)
P 		94
(0.4)
P 		96
(1)
P 		101.7
(3)
P 		18
C 62.3
(-3)
P 		87.3
(3)
P 		70.2
(-1.1)
P 		72.7
(-0.5)
P 		80.1
(1.3)
P 		79.6
(1.2)
P 		25
avr 61.3
(-3) 		85.2
(3) 		76.9
(0.9) 		81.6
(2.1) 		83.7
(2.6) 		79.9
(1.7) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193843_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2797
Sequence Type Exemplar sequence
Representative Public ID F07A11.6A NCBI
Target Description F07A11.6A /REP_DB=WormBase Gene ID /WP=CE23630 /TR=Q19135 /GB=CAB54501.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=RNA recognition motif. (aka RRM, RBD, or RNP domain)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182101(10), NM_064083(10), NM_064084(10), NM_001026897(10), NM_182102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182101 NCBI Caenorhabditis elegans DAF-12 Interacting Protein family member (din-1) (din-1) mRNA, complete cds. 10/11 None
NM_064083 NCBI Caenorhabditis elegans DAF-12 Interacting Protein family member (din-1) (din-1) mRNA, complete cds. 10/11 None
NM_064084 NCBI Caenorhabditis elegans DAF-12 Interacting Protein family member (din-1) (din-1) mRNA, complete cds. 10/11 None
NM_001026897 NCBI Caenorhabditis elegans DAF-12 Interacting Protein family member (din-1) (din-1) mRNA, complete cds. 10/11 None
NM_182102 NCBI Caenorhabditis elegans DAF-12 Interacting Protein family member (din-1) (din-1) mRNA, complete cds. 11/11 None
SNAP00000044556 ENSEMBL cdna:SNAP chromosome:CEL140:II:11615147:11617024:-1 10/11 None
GENEFINDER00000044566 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11615147:11619051:-1 11/11 None
F07A11.6a ENSEMBL cdna:known chromosome:CEL140:II:11614541:11633514:-1 gene:F07A11.6 10/11 None
F07A11.6c ENSEMBL cdna:known chromosome:CEL140:II:11614541:11633491:-1 gene:F07A11.6 10/11 None
F07A11.6d ENSEMBL cdna:known chromosome:CEL140:II:11614541:11619791:-1 gene:F07A11.6 11/11 None
F07A11.6b ENSEMBL cdna:known chromosome:CEL140:II:11615147:11633491:-1 gene:F07A11.6 10/11 None
F07A11.6e ENSEMBL cdna:known chromosome:CEL140:II:11615147:11632178:-1 gene:F07A11.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11615143-11633488(-) 97.07 100.0
Public Domain and Genome References
Ensembl F07A11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD57719 Hypothetical protein F07A11.6c [Caenorhabditis elegans] emb|CAD57694.1| Hypothetical protein F07A11.6c [Caenorhabditis elegans] ref|NP_871901.1| DAF-12 Interacting Protein family member (din-1) [Caenorhabditis elegans] 0.0
blast CAB54502 Hypothetical protein F07A11.6b [Caenorhabditis elegans] emb|CAB54211.2| Hypothetical protein F07A11.6b [Caenorhabditis elegans] ref|NP_496485.2| DAF-12 Interacting Protein family member (din-1) [Caenorhabditis elegans] 0.0
blast CAB54501 Hypothetical protein F07A11.6a [Caenorhabditis elegans] emb|CAB54210.3| Hypothetical protein F07A11.6a [Caenorhabditis elegans] ref|NP_496484.3| DAF-12 Interacting Protein family member (din-1) [Caenorhabditis elegans] 0.0
blast CAH60797 Hypothetical protein F07A11.6e [Caenorhabditis elegans] emb|CAH60796.1| Hypothetical protein F07A11.6e [Caenorhabditis elegans] ref|NP_001022068.1| DAF-12 Interacting Protein family member (din-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.1E-6
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:193843_S_AT
ggatgagcagtctttctcacagcacttcccaatggtctggaccggacgcttggctctaaa
atcaacagaagctatgataaatctccatttgatcaacggatccgagacattcctcaatga
tgttcttggacgtcaagtgactgaagagaatccacgtcgagactctgtgaagatcctcca
gcgacttcgtttggacaatggacaagttgagcacatctaccgaattctcacgaatcccga
gtacgcttgctgtcttgcactttcgtcggtcaacaatatcgagaacctgaaggaaaatga
taccaatttgaaatcccacttcatcgactaccttatcaataagaagatcgctgggatttc
gagtcttggagaagtcgagacgaagttcaaaagtgcccgggtccacgttttcgcaccagg
cgagattgtcaaccgatatctgtccgagttggccacctcgttgcatgactaccttcagaa
cactgacacccgctacctgctgatagtgttcaccaacgacaaggctgacccgaacatgac
tgggccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGAGCAGTCTTTCTCACAGCAC 473 513 7002 Antisense
AACGGATCCGAGACATTCCTCAATG 667 143 7096 Antisense
ACTCTGTGAAGATCCTCCAGCGACT 669 99 7163 Antisense
AATTCTCACGAATCCCGAGTACGCT 398 173 7224 Antisense
CTTGCACTTTCGTCGGTCAACAATA 609 215 7255 Antisense
CCACTTCATCGACTACCTTATCAAT 260 275 7317 Antisense
ATTGTCAACCGATATCTGTCCGAGT 411 3 7426 Antisense
CTCGTTGCATGACTACCTTCAGAAC 710 227 7458 Antisense
CGCTACCTGCTGATAGTGTTCACCA 579 255 7492 Antisense
GTGTTCACCAACGACAAGGCTGACC 430 485 7507 Antisense
GCTGACCCGAACATGACTGGGCCAC 578 289 7525 Antisense
Sequence Source Affymetrix Proprietary Database