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[193840_at]

Description F55H2.4 /REP_DB=WormBase Gene ID /WP=CE00211 /TR=SW:P34464 /GB=CAA81602.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Domain found in Dishevelled, Egl-10, and Pleckstrin
Cluster 6grp_total > 84      4grp_total > 44      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 9.6
(-1.7)
A 		31.3
(3)
A 		3.8
(-3)
A 		4.5
(-2.8)
A 		28
B 18.6
(3)
A 		8.7
(-1.6)
A 		14
(0.9)
A 		5.6
(-3)
A 		13
C 2.5
(-3)
A 		6.9
(1.5)
A 		5.8
(0.4)
A 		8.4
(3)
A 		6
avr 10.2
(-0.4) 		15.6
(3) 		7.9
(-1.9) 		6.2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 18.5
(0.1)
A 		5.6
(-3)
A 		8.7
(-2.3)
A 		30.9
(3)
A 		6.5
(-2.8)
A 		7.7
(-2.5)
A 		25
B 7.4
(-0.5)
A 		4.1
(-2.6)
A 		3.4
(-3)
A 		7.1
(-0.7)
A 		7
(-0.8)
A 		13.1
(3)
A 		10
C 6
(-2.7)
A 		4.5
(-3)
A 		13
(-1.3)
A 		7.6
(-2.4)
A 		35.3
(3)
A 		14.1
(-1.1)
A 		31
avr 10.6
(0.1) 		4.7
(-3) 		8.4
(-1.1) 		15.2
(2.4) 		16.3
(3) 		11.6
(0.6) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.5
(-0.2)
A 		6.8
(3)
A 		1
(-2.7)
A 		0.7
(-3)
A 		6
B 5.9
(3)
A 		2.2
(-1.7)
A 		3.2
(-0.4)
A 		1.2
(-3)
A 		5
C 0.8
(-3)
A 		2
(3)
A 		2
(3)
A 		1.4
(-0)
A 		1
avr 3.4
(2.3) 		3.7
(3) 		2.1
(-0.7) 		1.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.4
(-1.5)
A 		2
(-2.9)
A 		1.9
(-3)
A 		7.8
(3)
A 		2
(-2.9)
A 		1.9
(-3)
A 		6
B 2.6
(-0.4)
A 		1.4
(-2.1)
A 		0.8
(-3)
A 		1.9
(-1.4)
A 		2.8
(-0.1)
A 		4.9
(3)
A 		4
C 2.2
(-2.5)
A 		1.4
(-3)
A 		3.3
(-1.9)
A 		1.5
(-2.9)
A 		11.4
(3)
A 		4.7
(-1)
A 		10
avr 2.7
(-1.3) 		1.6
(-3) 		2
(-2.4) 		3.7
(0.3) 		5.4
(3) 		3.8
(0.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193840_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7390
Sequence Type Exemplar sequence
Representative Public ID F55H2.4 NCBI
Target Description F55H2.4 /REP_DB=WormBase Gene ID /WP=CE00211 /TR=SW:P34464 /GB=CAA81602.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Domain found in Dishevelled, Egl-10, and Pleckstrin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007116 ENSEMBL cdna:SNAP chromosome:CEL140:III:9504660:9506977:1 11/11 None
GENEFINDER00000007123 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9504660:9507066:1 10/11 None
F55H2.4 ENSEMBL cdna:pseudogene chromosome:CEL140:III:9504660:9506977:1 gene:F55H2.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9504655-9505898(+) 100.0 100.0
Public Domain and Genome References
Ensembl F55H2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01225 Hypothetical protein K08E7.3 [Caenorhabditis elegans] ref|NP_502407.1| LEThal family member (let-99) [Caenorhabditis elegans] sp|Q21341|LET99_CAEEL Lethal protein 0.0
blast P34464 Hypothetical protein F55H2.4 in chromosome III pir||S40987 hypothetical protein F55H2.4 - Caenorhabditis elegans 0.0
blast CAE65196 Hypothetical protein CBG10071 [Caenorhabditis briggsae] 0.0
blast CAE65196 Hypothetical protein CBG10071 [Caenorhabditis briggsae] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR000591 EMBL-EBI Pleckstrin putative G-protein interacting domain 3.9E-15
Sequence
Target Sequence 
>C. ELEGANS:193840_AT
ccgtcgttcaacatctcttgatcgaaatcatcgtgtactggaacaggaaaaagctgaaac
tgctcttcgtaaccagaaagtaaccactccgccaattcgagaagctccaaaagatgtggt
cttcatgcatccacaaagaccattgcctgcagttcctagcagatatcaaaatcatcagac
aaacatcgcaggatcaaatccagcattgttatcgcgtggaagaatgtacgaatccatcat
gagaagatcgtcggttgttccagttgcagactctctccagccgaacaacgaatgctcatt
gtggaaaaaagagttgcttggacgattggaacagatttacgatcgcactcttccctgtga
atgggcgtctaaagtcgacggacacgatattcaatggaacatgcttgaaatagatcatgt
tgatggaatcgtcaaatcaagatgtcagggactgcagccagattatccggaaactgtcat
tcaattcatggattatcttgttcgctatccatttgtcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCGTTCAACATCTCTTGATCGA 488 265 561 Antisense
GAAATCATCGTGTACTGGAACAGGA 212 363 584 Antisense
GAAACTGCTCTTCGTAACCAGAAAG 673 357 616 Antisense
GATGTGGTCTTCATGCATCCACAAA 352 409 673 Antisense
ACAAAGACCATTGCCTGCAGTTCCT 41 111 693 Antisense
AAATCATCAGACAAACATCGCAGGA 540 117 729 Antisense
CTCTCTCCAGCCGAACAACGAATGC 210 231 831 Antisense
GGGCGTCTAAAGTCGACGGACACGA 603 485 923 Antisense
GACTGCAGCCAGATTATCCGGAAAC 328 375 1010 Antisense
ATCCGGAAACTGTCATTCAATTCAT 665 35 1025 Antisense
TCTTGTTCGCTATCCATTTGTCACG 324 619 1056 Antisense
Sequence Source Affymetrix Proprietary Database