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[193838_s_at] Lectin C-type domain short and long forms (2 domains)

Description W04E12.6 /REP_DB=WormBase Gene ID /WP=CE19001 /TR=Q9XUL6 /GB=CAB04910.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 31      6grp_highest_nonorm > 51      6grp_total > 33      4grp_total > 61      6grp_cgc > 80      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 502.2
(3)
P 		486.6
(2.7)
P 		402.8
(1.4)
P 		130.9
(-3)
A 		371
B 484
(3)
P 		335.6
(0.6)
P 		485.5
(3)
P 		116
(-3)
A 		370
C 554.5
(3)
P 		421.6
(1.3)
P 		445
(1.6)
P 		85.7
(-3)
A 		469
avr 513.6
(3) 		414.6
(1.5) 		444.4
(2) 		110.9
(-3) 		403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 597
1 2 3 4 5 6 range
A 596
(2.2)
P 		620.9
(2.5)
P 		651.6
(3)
P 		360.3
(-1.5)
P 		259.1
(-3)
P 		304.3
(-2.3)
P 		393
B 608.5
(0.3)
P 		558.9
(-0.2)
P 		856.2
(3)
P 		416.5
(-1.8)
P 		342.7
(-2.6)
P 		304.2
(-3)
P 		552
C 714.8
(3)
P 		442.9
(-0.8)
P 		637.1
(1.9)
P 		289.9
(-3)
P 		414.6
(-1.2)
P 		340.6
(-2.3)
P 		425
avr 639.8
(1.9) 		540.9
(0.4) 		715
(3) 		355.6
(-2.4) 		338.8
(-2.7) 		316.4
(-3) 		399
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 182.8
(3)
P 		105.6
(0.2)
P 		105.3
(0.2)
P 		19.2
(-3)
A 		164
B 154.3
(3)
P 		82.9
(-0.3)
P 		112.5
(1.1)
P 		24.7
(-3)
A 		130
C 183.5
(3)
P 		121.2
(0.8)
P 		155.1
(2)
P 		14.5
(-3)
A 		169
avr 173.5
(3) 		103.2
(0.3) 		124.3
(1.1) 		19.5
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 109.9
(-1.5)
P 		220.8
(3)
P 		141.9
(-0.2)
P 		91.4
(-2.3)
P 		78.2
(-2.8)
P 		74.1
(-3)
P 		147
B 211.7
(3)
P 		186
(1.5)
P 		207.9
(2.8)
P 		110.3
(-3)
P 		139.2
(-1.3)
P 		113.4
(-2.8)
P 		101
C 264.9
(3)
P 		135.2
(-0.8)
P 		162.2
(0)
P 		58.3
(-3)
P 		134.1
(-0.8)
P 		114
(-1.4)
P 		207
avr 195.5
(3) 		180.7
(2.2) 		170.7
(1.6) 		86.7
(-3) 		117.2
(-1.3) 		100.5
(-2.2) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193838_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14314
Sequence Type Exemplar sequence
Representative Public ID W04E12.6 NCBI
Target Description W04E12.6 /REP_DB=WormBase Gene ID /WP=CE19001 /TR=Q9XUL6 /GB=CAB04910.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075428 NCBI Caenorhabditis elegans C-type LECtin family member (clec-49) (clec-49) mRNA, complete cds. 11/11 A 
SNAP00000038165 ENSEMBL cdna:SNAP chromosome:CEL140:V:19747010:19749184:-1 11/11 None
GENEFINDER00000038173 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19747010:19749184:-1 11/11 None
W04E12.6 ENSEMBL cdna:known chromosome:CEL140:V:19746985:19749210:-1 gene:W04E12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18160606-18162142(+) 90.79 90.79
chrV:19747009-19749184(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-49
Ensembl W04E12.6
Entrez Gene 180298 Entrez gene
SwissProt Q9XUL6 EMBL-EBI
WormBase CE19001 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04910 Hypothetical protein W04E12.6 [Caenorhabditis elegans] ref|NP_507829.1| C-type LECtin family member (clec-49) [Caenorhabditis elegans] 1.0E-174
blast CAB03881 Hypothetical protein C14A6.1 [Caenorhabditis elegans] ref|NP_507547.1| C-type LECtin family member (clec-48) [Caenorhabditis elegans] 1.0E-169
blast CAB04909 Hypothetical protein W04E12.8 [Caenorhabditis elegans] ref|NP_507830.1| C-type LECtin family member (clec-50) [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 3.0E-21
Pfam IPR001304 EMBL-EBI C-type lectin 1.3E-23
Sequence
Target Sequence 
>C. ELEGANS:193838_S_AT
gcgagccccaatctggaagtgactgtgcaattcaggataagggagatggaacctggtcgg
ctattggatgtacttcctacaggccatatgtatgtgtcacacctgttattatgactgcca
cgtgtccaccaatcactacaccgattccaaccacatgtcccacaccggctccatgtccca
tcaagcagtgtgtcccgtcttgtgatcaaggctggacctacttctctccaaccgacttct
gttatcgtgtgtaccatggtgaaaagttcaatgacgctgaggcatcgtgtgtgctgctgg
gaggacatttagcatcaatccactcgctgacagagaacacttttgttaataacatcgctt
cctgcgggatcaaagaaggcaaatatgaacacctagcgtggatcggtatgcgcaaggtcg
gccaggactgggtatggactgacggtaccccatcggactacttcaactgggccccaaagc
agcctgacaatccgaaaaaagagttgtgcgtgcaaactgctcctgatctttctcacgata
agt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGCCCCAATCTGGAAGTGACTG 538 289 356 Antisense
CGTGTGTGCTGCTGGGAGGACATTT 381 243 641 Antisense
GAGGACATTTAGCATCAATCCACTC 334 405 656 Antisense
TTTAGCATCAATCCACTCGCTGACA 591 671 663 Antisense
AATCCACTCGCTGACAGAGAACACT 525 167 672 Antisense
TCGCTGACAGAGAACACTTTTGTTA 150 595 679 Antisense
CATCGCTTCCTGCGGGATCAAAGAA 417 211 708 Antisense
GAAGGCAAATATGAACACCTAGCGT 704 331 730 Antisense
ATGAACACCTAGCGTGGATCGGTAT 160 43 740 Antisense
AAAAGAGTTGTGCGTGCAAACTGCT 133 133 852 Antisense
GCTCCTGATCTTTCTCACGATAAGT 412 297 874 Antisense
Sequence Source Affymetrix Proprietary Database