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[193836_s_at] Lectin C-type domain short and long forms (2 domains)

Description W04E12.8 /REP_DB=WormBase Gene ID /WP=CE19003 /TR=Q9XUL7 /GB=CAB04909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 05      6grp_total > 32      4grp_total > 59      6grp_highest_sub > 01_02_03      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8556
1 2 3 4 range
A 6237
(0.3)
P 		10002
(3)
P 		9448.4
(2.6)
P 		1701.1
(-3)
P 		8301
B 6927.8
(0.9)
P 		8662.2
(2.1)
P 		9883.2
(3)
P 		1603.5
(-3)
P 		8280
C 6412.6
(0.9)
P 		8815.5
(2.8)
P 		9027.7
(3)
P 		1446.2
(-3)
P 		7582
avr 6525.8
(0.8) 		9159.9
(2.8) 		9453.1
(3) 		1583.6
(-3) 		7870

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6397
1 2 3 4 5 6 range
A 6838.8
(1)
P 		7534.3
(1.7)
P 		8791.5
(3)
P 		5040.5
(-0.7)
P 		3595.6
(-2.2)
P 		2789.3
(-3)
P 		6002
B 7044.6
(1.3)
P 		6818.9
(1)
P 		8905.8
(3)
P 		4846.6
(-0.8)
P 		3966.7
(-1.6)
P 		2508.5
(-3)
P 		6397
C 6786.6
(1.1)
P 		6715.2
(1.1)
P 		8709.5
(3)
P 		3813
(-1.7)
P 		3612.7
(-1.9)
P 		2524.2
(-3)
P 		6185
avr 6890
(1.1) 		7022.8
(1.3) 		8802.3
(3) 		4566.7
(-1.1) 		3725
(-1.9) 		2607.3
(-3) 		6195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2903
1 2 3 4 range
A 2270.9
(2.5)
P 		2171.2
(2.2)
P 		2470
(3)
P 		249
(-3)
P 		2221
B 2209.2
(2.8)
P 		2139.4
(2.5)
P 		2290.2
(3)
P 		341.7
(-3)
P 		1949
C 2122.7
(0.9)
P 		2534.5
(1.7)
P 		3146.4
(3)
P 		243.9
(-3)
P 		2903
avr 2200.9
(1.9) 		2281.7
(2.1) 		2635.5
(3) 		278.2
(-3) 		2357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2001
1 2 3 4 5 6 range
A 1260.7
(-1.3)
P 		2679.6
(3)
P 		1914.6
(0.7)
P 		1278.4
(-1.2)
P 		1085
(-1.8)
P 		679.1
(-3)
P 		2001
B 2451.2
(3)
P 		2269.7
(2.3)
P 		2162.6
(1.9)
P 		1283.7
(-1.6)
P 		1611.6
(-0.3)
P 		935.4
(-3)
P 		1516
C 2515.5
(3)
P 		2049
(1.4)
P 		2216.7
(2)
P 		766.8
(-3)
P 		1169
(-1.6)
P 		845
(-2.7)
P 		1749
avr 2075.8
(2) 		2332.8
(3) 		2098
(2.1) 		1109.6
(-1.9) 		1288.5
(-1.1) 		819.8
(-3) 		1513
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193836_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14425
Sequence Type Exemplar sequence
Representative Public ID W04E12.8 NCBI
Target Description W04E12.8 /REP_DB=WormBase Gene ID /WP=CE19003 /TR=Q9XUL7 /GB=CAB04909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075429 NCBI Caenorhabditis elegans C-type LECtin family member (clec-50) (clec-50) mRNA, complete cds. 11/11 None
SNAP00000038166 ENSEMBL cdna:SNAP chromosome:CEL140:V:19750449:19751240:-1 10/11 None
GENEFINDER00000038171 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19750449:19753334:-1 11/11 None
W04E12.8 ENSEMBL cdna:known chromosome:CEL140:V:19750402:19753354:-1 gene:W04E12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009392 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009403 1/11 Cross Hyb Matching Probes None
SNAP00000038167 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19750448-19753334(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-50
Ensembl W04E12.8
Entrez Gene 180299 Entrez gene
SwissProt Q9XUL7 EMBL-EBI
WormBase CE19003 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606101_AT similar to Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen) (gp200-MR6) cfa
CANINE_2:CFA.3434.1.S1_AT similar to Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen) (gp200-MR6) cfa
CANINE_2:CFAAFFX.15106.1.S1_S_AT similar to Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen) (gp200-MR6) cfa
CANINE_2:CFAAFFX.15108.1.S1_AT similar to Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen) (gp200-MR6) cfa
HG-U133_PLUS_2:205668_AT lymphocyte antigen 75 hs
HG-U133A:205668_AT lymphocyte antigen 75 hs
HG-FOCUS:205668_AT lymphocyte antigen 75 hs
HG-U133A_2:205668_AT lymphocyte antigen 75 hs
HU35KSUBC:RC_AA279177_AT lymphocyte antigen 75 hs
U133_X3P:G4505052_3P_AT lymphocyte antigen 75 hs
HG-U95AV2:38160_AT lymphocyte antigen 75 hs
HG-U95D:73863_AT lymphocyte antigen 75 hs
HU35KSUBB:RC_AA214553_AT Lymphocyte antigen 75 hs
HG-U95C:49378_F_AT Lymphocyte antigen 75 hs
HG-U95C:52912_AT Lymphocyte antigen 75 hs
MG-U74AV2:103258_AT lymphocyte antigen 75 mm
MOE430A:1449328_AT lymphocyte antigen 75 mm
MOUSE430A_2:1449328_AT lymphocyte antigen 75 mm
MOUSE430_2:1449328_AT lymphocyte antigen 75 mm
MU11KSUBA:U19271_S_AT lymphocyte antigen 75 mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04909 Hypothetical protein W04E12.8 [Caenorhabditis elegans] ref|NP_507830.1| C-type LECtin family member (clec-50) [Caenorhabditis elegans] 1.0E-169
blast CAE71003 Hypothetical protein CBG17839 [Caenorhabditis briggsae] 1.0E-155
blast CAB03881 Hypothetical protein C14A6.1 [Caenorhabditis elegans] ref|NP_507547.1| C-type LECtin family member (clec-48) [Caenorhabditis elegans] 1.0E-147
blast CAB04909 Hypothetical protein W04E12.8 [Caenorhabditis elegans] ref|NP_507830.1| C-type LECtin family member (clec-50) [Caenorhabditis elegans] 2.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-21
Pfam IPR001304 EMBL-EBI C-type lectin 8.5E-26
Pfam IPR001304 EMBL-EBI C-type lectin 8.5E-26
Sequence
Target Sequence 
>C. ELEGANS:193836_S_AT
gtgaaccccaatccggaagtgactgtgcaattcaggataagggagatggaacctggtcgg
ctattggatgtacttcctacaggccatatgtatgtgtcacacctgttattatgactgcca
cgtgtccaccaatcactacaccgattccaactacctgccctacgccagctccgtgccctg
tcaagacctgcgtgccgtcttgcgaccaaggatggacctactttgcaccaaccgacttct
gctatcgtgtctaccataacgccaagtgggaggacgcagaggctgcgtgtgtgctccttg
gagctcacttgacctcagttcactcggaaaccgagaacaccttcgttgctaaccttgcct
cgtgtggaatcaaggaaggaaacccgaaggatctcgcgtggatcggtatgcacaaggtcg
gtcaggactgggtatggactgacggtaccccatcaaactacatcaactgggcaccaaagc
agcctgacaatccgggaaaggaaaattgtgtggagacagcgccggatctttcccacgata
agtggtatgagaactggaataacgaggcgtgcagcaccgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAACCCCAATCCGGAAGTGACTG 163 471 356 Antisense
TGTCAAGACCTGCGTGCCGTCTTGC 674 557 534 Antisense
GTGCCGTCTTGCGACCAAGGATGGA 259 479 547 Antisense
AAGGATGGACCTACTTTGCACCAAC 307 161 563 Antisense
GCTATCGTGTCTACCATAACGCCAA 42 305 596 Antisense
GTGTGCTCCTTGGAGCTCACTTGAC 384 487 644 Antisense
GACCTCAGTTCACTCGGAAACCGAG 128 383 666 Antisense
GAAACCCGAAGGATCTCGCGTGGAT 309 359 734 Antisense
GTACCCCATCAAACTACATCAACTG 395 457 800 Antisense
AATTGTGTGGAGACAGCGCCGGATC 602 179 859 Antisense
GAATAACGAGGCGTGCAGCACCGAG 457 323 912 Antisense
Sequence Source Affymetrix Proprietary Database