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[193835_s_at] WW/rsp5/WWP domain containing proteins (2 domains)

Description ZK1098.1 /REP_DB=WormBase Gene ID /WP=CE03847 /TR=SW:P34600 /GB=CAA80142.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=WW-rsp5-WWP domain containing proteins (2 domains)
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 370.7
(3)
P 		235.9
(-3)
P 		352.3
(2.2)
P 		302.1
(-0.1)
P 		135
B 344.8
(2.8)
P 		210
(-3)
P 		233.4
(-2)
P 		349.6
(3)
P 		140
C 324.5
(2.1)
P 		157.3
(-3)
P 		352.3
(3)
P 		263
(0.3)
P 		195
avr 346.7
(3) 		201.1
(-3) 		312.7
(1.6) 		304.9
(1.3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 431
1 2 3 4 5 6 range
A 188.5
(-3)
P 		191.1
(-3)
P 		272.4
(-1.6)
P 		298.3
(-1.2)
P 		270.1
(-1.7)
P 		551.6
(3)
P 		363
B 351.8
(-1.1)
P 		276.3
(-2.3)
P 		339.2
(-1.3)
P 		312
(-1.7)
P 		227.4
(-3)
P 		619.6
(3)
P 		392
C 363.4
(-0.7)
P 		360.2
(-0.8)
P 		244.1
(-2.6)
P 		255.5
(-2.4)
P 		219.5
(-3)
P 		596.7
(3)
P 		377
avr 301.2
(-1.9) 		275.9
(-2.4) 		285.2
(-2.2) 		288.6
(-2.2) 		239
(-3) 		589.3
(3) 		350
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 135
(3)
P 		51.2
(-2.5)
P 		92.1
(0.2)
P 		44.2
(-3)
P 		91
B 109.9
(3)
P 		51.9
(-3)
P 		54.1
(-2.8)
P 		74.5
(-0.7)
P 		58
C 107.4
(1.8)
P 		45.2
(-2.9)
P 		122.8
(3)
P 		44.3
(-3)
P 		79
avr 117.4
(3) 		49.4
(-3) 		89.7
(0.6) 		54.3
(-2.6) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 34.7
(-3)
P 		68
(-1)
P 		59.3
(-1.5)
P 		75.7
(-0.5)
P 		81.5
(-0.2)
P 		134.3
(3)
P 		100
B 122.4
(-1.4)
P 		92
(-2.6)
P 		82.4
(-3)
P 		82.6
(-3)
P 		92.4
(-2.6)
P 		231.1
(3)
P 		149
C 134.7
(0.4)
P 		109.9
(-0.6)
P 		62.1
(-2.6)
P 		51.4
(-3)
P 		71
(-2.2)
P 		199.8
(3)
P 		148
avr 97.3
(-1.5) 		90
(-1.9) 		67.9
(-3) 		69.9
(-2.9) 		81.6
(-2.3) 		188.4
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193835_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6081
Sequence Type Exemplar sequence
Representative Public ID ZK1098.1 NCBI
Target Description ZK1098.1 /REP_DB=WormBase Gene ID /WP=CE03847 /TR=SW:P34600 /GB=CAA80142.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=WW-rsp5-WWP domain containing proteins (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066697(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066697 NCBI Caenorhabditis elegans ZK1098.1 (ZK1098.1) mRNA, complete cds. 11/11 None
SNAP00000005009 ENSEMBL cdna:SNAP chromosome:CEL140:III:9522134:9525240:1 11/11 None
GENEFINDER00000005026 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9523781:9525240:1 11/11 None
ZK1098.1 ENSEMBL cdna:known chromosome:CEL140:III:9521971:9525289:1 gene:ZK1098.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9521967-9525236(+) 98.16 100.0
Public Domain and Genome References
Gene Title WW/rsp5/WWP domain containing proteins (2 domains)
Ensembl ZK1098.1
Entrez Gene 176343 Entrez gene
SwissProt P34600 EMBL-EBI
WormBase CE03847 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257075_AT FF domain-containing protein / WW domain-containing protein at
CANINE:1606070_AT similar to Formin-binding protein 3 (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas-ligand associated factor 1) (NY-REN-6 antigen) cfa
CANINE_2:CFA.3344.1.S1_AT similar to Formin-binding protein 3 (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas-ligand associated factor 1) (NY-REN-6 antigen) cfa
CANINE_2:CFAAFFX.9716.1.S1_S_AT similar to Formin-binding protein 3 (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas-ligand associated factor 1) (NY-REN-6 antigen) cfa
DROSOPHILA_2:1638446_A_AT dm
DROSGENOME1:154288_AT dm
CHICKEN:GGA.1921.1.S1_A_AT formin binding protein 3 gga
CHICKEN:GGA.19708.1.S1_AT formin binding protein 3 gga
CHICKEN:GGA.1921.2.S1_AT formin binding protein 3 gga
HG-U95B:42366_AT formin binding protein 3 hs
HG-U133A:218053_AT formin binding protein 3 hs
HG-U133A_2:218053_AT formin binding protein 3 hs
HG-U133_PLUS_2:218053_AT formin binding protein 3 hs
HG-U95AV2:37506_AT formin binding protein 3 hs
HU35KSUBA:H19089_AT formin binding protein 3 hs
HU35KSUBA:AA313387_AT formin binding protein 3 hs
HU35KSUBC:RC_N93193_AT formin binding protein 3 hs
HU35KSUBD:RC_AA421164_F_AT formin binding protein 3 hs
HU35KSUBD:RC_AA421164_R_AT formin binding protein 3 hs
HU35KSUBD:RC_AA412712_AT formin binding protein 3 hs
HU35KSUBD:RC_AA481403_AT formin binding protein 3 hs
U133_X3P:G8923548_3P_AT formin binding protein 3 hs
U133_X3P:HS.119325.1.S1_3P_A_AT formin binding protein 3 hs
U133_X3P:HS.119325.0.S1_3P_AT formin binding protein 3 hs
U133_X3P:HS.107213.1.S1_3P_A_AT formin binding protein 3 hs
HG-U133A_2:213729_AT formin binding protein 3 hs
HG-U133_PLUS_2:213729_AT formin binding protein 3 hs
HG-U133A:213729_AT formin binding protein 3 hs
HG-U133A_2:214941_S_AT formin binding protein 3 hs
HG-U133_PLUS_2:214941_S_AT formin binding protein 3 hs
HG-U133A:214941_S_AT formin binding protein 3 hs
HG-U133_PLUS_2:233080_S_AT formin binding protein 3 hs
HG-U133B:233080_S_AT formin binding protein 3 hs
HG-U95AV2:37507_I_AT formin binding protein 3 hs
HG-U95AV2:37508_F_AT formin binding protein 3 hs
HG-U95B:56362_AT formin binding protein 3 hs
HG-U133_PLUS_2:226687_AT Formin binding protein 3 hs
HG-U133B:226687_AT Formin binding protein 3 hs
HG-U133_PLUS_2:236477_AT Formin binding protein 3 hs
HG-U133B:236477_AT Formin binding protein 3 hs
HG-U95B:42279_AT Formin binding protein 3 hs
HG-U95B:54844_AT Formin binding protein 3 hs
HG-U95C:65368_AT Formin binding protein 3 hs
HG-U95D:71787_R_AT Formin binding protein 3 hs
HU35KSUBA:AA047344_AT Formin binding protein 3 hs
HU35KSUBB:RC_T97633_AT Formin binding protein 3 hs
HU35KSUBD:RC_AA176247_AT Formin binding protein 3 hs
HU35KSUBD:RC_AA280794_AT Formin binding protein 3 hs
U133_X3P:HS.104030.0.A1_3P_AT Formin binding protein 3 hs
U133_X3P:HS.294008.0.A1_3P_AT Formin binding protein 3 hs
MG-U74BV2:115784_AT formin binding protein 3 mm
MG-U74BV2:111135_AT formin binding protein 3 mm
MG-U74BV2:113028_AT formin binding protein 3 mm
MG-U74CV2:132057_AT formin binding protein 3 mm
MG-U74BV2:164021_AT formin binding protein 3 mm
MOE430A:1420917_AT formin binding protein 3 mm
MOUSE430A_2:1420917_AT formin binding protein 3 mm
MOUSE430_2:1420917_AT formin binding protein 3 mm
MOE430A:1450035_A_AT formin binding protein 3 mm
MOUSE430A_2:1450035_A_AT formin binding protein 3 mm
MOUSE430_2:1450035_A_AT formin binding protein 3 mm
MOE430A:1420916_AT formin binding protein 3 mm
MOUSE430A_2:1420916_AT formin binding protein 3 mm
MOUSE430_2:1420916_AT formin binding protein 3 mm
MOE430B:1429437_AT formin binding protein 3 mm
MOUSE430_2:1429437_AT formin binding protein 3 mm
MOE430B:1429436_AT formin binding protein 3 mm
MOUSE430_2:1429436_AT formin binding protein 3 mm
MOE430B:1442171_AT formin binding protein 3 mm
MOUSE430_2:1442171_AT formin binding protein 3 mm
MG-U74BV2:105270_AT Formin binding protein 3 (Fnbp3), mRNA mm
MOE430B:1447466_AT Formin binding protein 3 (Fnbp3), mRNA mm
MOUSE430_2:1447466_AT Formin binding protein 3 (Fnbp3), mRNA mm
MU19KSUBB:TC34185_AT Formin binding protein 3 (Fnbp3), mRNA mm
MU19KSUBC:TC36822_AT Formin binding protein 3 (Fnbp3), mRNA mm
MU19KSUBC:TC37824_AT Formin binding protein 3 (Fnbp3), mRNA mm
MU19KSUBC:TC40587_S_AT Formin binding protein 3 (Fnbp3), mRNA mm
RAE230B:1384792_AT formin binding protein 3 (predicted) rn
RAT230_2:1384792_AT formin binding protein 3 (predicted) rn
RAE230B:1382540_AT Formin binding protein 3 (predicted) rn
RAT230_2:1382540_AT Formin binding protein 3 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA80142 Hypothetical protein ZK1098.1 [Caenorhabditis elegans] ref|NP_499098.1| ZK1098.1 [Caenorhabditis elegans] sp|P34600|YO61_CAEEL Hypothetical protein ZK1098.1 in chromosome III 0.0
blast S40923 hypothetical protein ZK1098.1 - Caenorhabditis elegans 0.0
blast CAE65190 Hypothetical protein CBG10063 [Caenorhabditis briggsae] 0.0
blast CAA80142 Hypothetical protein ZK1098.1 [Caenorhabditis elegans] ref|NP_499098.1| ZK1098.1 [Caenorhabditis elegans] sp|P34600|YO61_CAEEL Hypothetical protein ZK1098.1 in chromosome III 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 6.1E-10
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.2E-11
Pfam IPR002713 EMBL-EBI FF domain 3.7E-16
Pfam IPR002713 EMBL-EBI FF domain 9.5E-11
Pfam IPR002713 EMBL-EBI FF domain 2.5E-14
Pfam IPR002713 EMBL-EBI FF domain 1.8E-10
Pfam IPR002713 EMBL-EBI FF domain 2.8E-17
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 6.1E-10
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.2E-11
Pfam IPR002713 EMBL-EBI FF domain 3.7E-16
Pfam IPR002713 EMBL-EBI FF domain 9.5E-11
Pfam IPR002713 EMBL-EBI FF domain 2.5E-14
Pfam IPR002713 EMBL-EBI FF domain 1.8E-10
Pfam IPR002713 EMBL-EBI FF domain 2.8E-17
Pfam IPR002713 EMBL-EBI FF domain 9.5E-11
Pfam IPR002713 EMBL-EBI FF domain 2.5E-14
Pfam IPR002713 EMBL-EBI FF domain 1.8E-10
Pfam IPR002713 EMBL-EBI FF domain 2.8E-17
Sequence
Target Sequence 
>C. ELEGANS:193835_S_AT
gggtgtcaggtgatagcaacaaccgagtacagggaattttctgattgggttgtttctcat
gagaaaggaggaaaagttgatcatggaaacatgaaactttgttacaactcactgattgaa
aaagctgaaagcaaggcgaaggatgaggaaaaagagtcgctgagaaggaaaagaagactg
gagagcgaattcagaaatctactgaaagagcataatgtcgataaagattccgaatggact
gtaatcaagccaaagattgaaaaagataaggcttatcttgccatggagaatgacgatgaa
cgagagactgcatttaatcattataaaaacggaacaagtggaactactgctggaagcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGTCAGGTGATAGCAACAACCG 490 493 1576 Antisense
GCAACAACCGAGTACAGGGAATTTT 25 317 1591 Antisense
GAATTTTCTGATTGGGTTGTTTCTC 533 325 1609 Antisense
CTGATTGGGTTGTTTCTCATGAGAA 162 239 1616 Antisense
AACTTTGTTACAACTCACTGATTGA 443 139 1670 Antisense
GGAGAGCGAATTCAGAAATCTACTG 380 519 1755 Antisense
GAGCATAATGTCGATAAAGATTCCG 524 387 1783 Antisense
ATTCCGAATGGACTGTAATCAAGCC 689 5 1802 Antisense
GGCTTATCTTGCCATGGAGAATGAC 2 537 1845 Antisense
GAACGAGAGACTGCATTTAATCATT 430 347 1873 Antisense
AAGTGGAACTACTGCTGGAAGCGAA 561 157 1911 Antisense
Sequence Source Affymetrix Proprietary Database