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[193832_at] Glutaredoxin, Zinc finger, C3HC4 type (RING finger)

Description C16C10.5 /REP_DB=WormBase Gene ID /WP=CE01496 /TR=SW:Q09251 /GB=CAA86743.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glutaredoxin, Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_high_8_8 > 53      6grp_highest_nonorm > 62      6grp_total > 30      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 290.6
(2.8)
P 		292.3
(2.8)
P 		295.6
(3)
P 		166.1
(-3)
M 		130
B 271.4
(-0.5)
P 		436.5
(3)
P 		352.6
(1.2)
P 		152.4
(-3)
P 		284
C 242.4
(-1.4)
P 		330.1
(2.6)
P 		338.7
(3)
P 		208.6
(-3)
P 		130
avr 268.1
(0.1) 		353
(3) 		329
(2.2) 		175.7
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 512
(1.4)
P 		368.1
(-1.1)
P 		606.4
(3)
P 		522.7
(1.6)
P 		463.9
(0.5)
P 		259.1
(-3)
P 		347
B 543
(1.5)
P 		583.7
(3)
P 		463.6
(-1.3)
P 		580.8
(2.9)
P 		523.3
(0.8)
P 		416.3
(-3)
P 		167
C 382.6
(-2.1)
P 		666.6
(3)
P 		383.4
(-2.1)
P 		666.7
(3)
P 		330.5
(-3)
P 		420
(-1.4)
P 		336
avr 479.2
(0) 		539.5
(1.7) 		484.5
(0.2) 		590.1
(3) 		439.2
(-1) 		365.1
(-3) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 105.8
(3)
P 		63.5
(-0.1)
P 		77.3
(0.9)
P 		24.3
(-3)
M 		82
B 86.6
(1.3)
P 		107.8
(3)
P 		81.7
(0.9)
P 		32.5
(-3)
P 		75
C 80.2
(0.3)
P 		94.9
(1.3)
P 		118.1
(3)
P 		35.2
(-3)
P 		83
avr 90.9
(2.9) 		88.7
(2.6) 		92.4
(3) 		30.7
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 94.4
(-0.6)
P 		130.9
(2.3)
P 		132.1
(2.4)
P 		132.6
(2.4)
P 		140
(3)
P 		63.1
(-3)
P 		77
B 188.9
(1.6)
P 		194.3
(1.9)
P 		112.6
(-3)
P 		153.8
(-0.5)
P 		212.6
(3)
P 		155.2
(-0.4)
P 		100
C 141.8
(-0.5)
P 		203.4
(3)
P 		97.6
(-3)
P 		134.1
(-0.9)
P 		106.9
(-2.5)
P 		140.6
(-0.6)
P 		106
avr 141.7
(-0.3) 		176.2
(3) 		114.1
(-3) 		140.2
(-0.5) 		153.2
(0.8) 		119.6
(-2.5) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5996
Sequence Type Exemplar sequence
Representative Public ID C16C10.5 NCBI
Target Description C16C10.5 /REP_DB=WormBase Gene ID /WP=CE01496 /TR=SW:Q09251 /GB=CAA86743.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glutaredoxin, Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065431 NCBI Caenorhabditis elegans C16C10.5 (C16C10.5) mRNA, complete cds. 11/11 None
SNAP00000043773 ENSEMBL cdna:SNAP chromosome:CEL140:III:4169060:4170910:-1 11/11 None
GENEFINDER00000043782 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4169060:4170910:-1 11/11 None
C16C10.5 ENSEMBL cdna:known chromosome:CEL140:III:4169060:4171132:-1 gene:C16C10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4169059-4171132(-) 100.0 100.0
Public Domain and Genome References
Gene Title Glutaredoxin, Zinc finger, C3HC4 type (RING finger)
Ensembl C16C10.5
Entrez Gene 182681 Entrez gene
SwissProt Q09251 EMBL-EBI
WormBase CE01496 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583926_AT similar to ring finger protein 121 isoform 1 cfa
CANINE_2:CFAAFFX.9725.1.S1_S_AT similar to ring finger protein 121 isoform 1 cfa
DROSOPHILA_2:1624222_S_AT dm
DROSGENOME1:151942_AT dm
CHICKEN:GGA.10196.1.A1_AT similar to RNF121 protein gga
CHICKEN:GGAAFFX.22391.1.S1_AT similar to RNF121 protein gga
HU35KSUBC:RC_AA026901_AT ring finger protein 121 hs
HG-U133A:219021_AT ring finger protein 121 hs
HG-U133_PLUS_2:219021_AT ring finger protein 121 hs
HG-U133A_2:219021_AT ring finger protein 121 hs
U133_X3P:G8922862_3P_AT ring finger protein 121 hs
HG-U95B:49910_AT ring finger protein 121 hs
HG-U95E:74669_AT ring finger protein 121 hs
HG-U95E:74670_AT ring finger protein 121 hs
HG-U95C:56270_AT Ring finger protein 121 hs
HG-U95C:59090_AT Ring finger protein 121 hs
HG-U95C:66921_R_AT Ring finger protein 121 hs
HU35KSUBA:RC_AA027055_AT Ring finger protein 121 hs
MOE430A:1426504_A_AT ring finger protein 121 mm
MOUSE430A_2:1426504_A_AT ring finger protein 121 mm
MOUSE430_2:1426504_A_AT ring finger protein 121 mm
MG-U74BV2:109935_AT ring finger protein 121 mm
MG-U74BV2:110720_AT ring finger protein 121 mm
MG-U74BV2:164833_F_AT ring finger protein 121 mm
MG-U74CV2:168287_I_AT ring finger protein 121 mm
MOE430A:1426503_A_AT ring finger protein 121 mm
MOUSE430A_2:1426503_A_AT ring finger protein 121 mm
MOUSE430_2:1426503_A_AT ring finger protein 121 mm
MU19KSUBB:TC32261_AT Ring finger protein 121, mRNA (cDNA clone MGC:31393 IMAGE:4241984) mm
RAE230B:1385403_AT ring finger protein 121 (predicted) rn
RAT230_2:1385403_AT ring finger protein 121 (predicted) rn
RG-U34B:RC_AI058291_AT ring finger protein 121 (predicted) rn
RG-U34C:RC_AI071834_AT ring finger protein 121 (predicted) rn
RAE230B:1385644_AT ring finger protein 121 (predicted) rn
RAT230_2:1385644_AT ring finger protein 121 (predicted) rn
RAE230B:1386639_AT ring finger protein 121 (predicted) rn
RAT230_2:1386639_AT ring finger protein 121 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA86743 Hypothetical protein C16C10.5 [Caenorhabditis elegans] ref|NP_497832.1| C16C10.5 [Caenorhabditis elegans] sp|Q09251|YQ55_CAEEL Hypothetical RING finger protein C16C10.5 in chromosome III 0.0
blast CAE72855 Hypothetical protein CBG20154 [Caenorhabditis briggsae] 1.0E-180
blast AAN09595 CG15814-PC, isoform C [Drosophila melanogaster] gb|AAN09594.1| CG15814-PB, isoform B [Drosophila melanogaster] gb|AAF48770.1| CG15814-PA, isoform A [Drosophila melanogaster] ref|NP_728099.1| CG15814-PC, isoform C [Drosophila melanogaster] ref|NP_573247.2| CG15814-PA, isoform A [Drosophila melanogaster] ref|NP_728098.1| CG15814-PB, isoform B [Drosophila melanogaster] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.4E-7
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497832.1 5 120-142,149-171,175-194,215-234,244-263
C16C10.5 5 120-142,149-171,175-194,215-234,244-263
SNAP00000043773 5 44-66,76-93,100-122,142-164,171-193
GENEFINDER00000043782 5 44-66,76-93,100-122,142-164,171-193
Sequence
Target Sequence 
>C. ELEGANS:193832_AT
attcggagtttcacagccaacactaatggatgccggcatccttttcatgttctatggtgt
gtattacggagtgctcggccgggattttgctcacatttgcacggcgagaatggcgtcgag
aatcgggtattacactcctgaaggacttcctaaaaagcatctagaagacggtgtctgtgc
tgtttgtggaggacgtcttgatgattcggaacatgttcatgatgcagatgctgtggttac
aacgaaaatggttgaagatgaagatgaaaaattgtataaactctcatgtggccacgtttt
tcacgaattctgtatcagaggatgggtagttgttggaaaacttcaaacatgcccgtattg
caaagaacgtgtcgatttacagagaatgtttaaaaatccatgggagaaacctcatttatt
ctatggaaaattgcttgactggatccgttatctcgtctgctggcagccattgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGGAGTTTCACAGCCAACACTA 464 9 723 Antisense
GGCATCCTTTTCATGTTCTATGGTG 561 535 757 Antisense
GGTGTGTATTACGGAGTGCTCGGCC 86 501 778 Antisense
TTTTGCTCACATTTGCACGGCGAGA 577 677 807 Antisense
ATCGGGTATTACACTCCTGAAGGAC 396 33 844 Antisense
GGTGTCTGTGCTGTTTGTGGAGGAC 626 499 892 Antisense
GGAGGACGTCTTGATGATTCGGAAC 577 515 910 Antisense
TCTCATGTGGCCACGTTTTTCACGA 400 611 1004 Antisense
GGAAAACTTCAAACATGCCCGTATT 512 527 1057 Antisense
GCTTGACTGGATCCGTTATCTCGTC 468 305 1155 Antisense
ATCTCGTCTGCTGGCAGCCATTGAT 224 33 1172 Antisense
Sequence Source Affymetrix Proprietary Database