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[193831_at] PhoX homologous domain, present in p47phox and p40phox.

Description W06D4.5 /REP_DB=WormBase Gene ID /WP=CE16547 /TR=Q9XW41 /GB=CAA22253.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PhoX homologous domain, present in p47phox and p40phox.
Cluster 6grp_total > 47      4grp_total > 16      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 12.2
(-1.4)
A 		9.9
(-3)
A 		18.5
(3)
A 		10.8
(-2.4)
A 		9
B 17.4
(-2.2)
A 		20.8
(-1.9)
A 		7.9
(-3)
A 		79.4
(3)
A 		72
C 16.8
(-3)
A 		22.6
(-2.1)
A 		55
(3)
A 		27.5
(-1.3)
A 		38
avr 15.5
(-3) 		17.8
(-2.4) 		27.1
(-0.1) 		39.2
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 92.6
(3)
A 		40.5
(-0.7)
A 		25.9
(-1.7)
A 		8
(-3)
A 		22.6
(-2)
A 		61.7
(0.8)
A 		85
B 28.2
(-0.1)
A 		45.8
(3)
A 		40.8
(2.1)
A 		23.2
(-1)
A 		12
(-3)
A 		38.3
(1.7)
A 		34
C 8.2
(-3)
A 		31.7
(-0.5)
A 		13.6
(-2.4)
A 		40.1
(0.4)
A 		15.5
(-2.2)
A 		63.7
(3)
A 		56
avr 43
(1.2) 		39.3
(0.6) 		26.8
(-1.4) 		23.8
(-1.9) 		16.7
(-3) 		54.6
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.4
(2.3)
A 		2.2
(-1.9)
A 		4.8
(3)
A 		1.6
(-3)
A 		3
B 5.5
(-1.5)
A 		5.1
(-1.7)
A 		1.8
(-3)
A 		16.9
(3)
A 		15
C 5.6
(-2.6)
A 		6.5
(-2.2)
A 		19.2
(3)
A 		4.6
(-3)
A 		15
avr 5.2
(-2.1) 		4.6
(-3) 		8.6
(3) 		7.7
(1.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 17.1
(3)
A 		14.4
(1.9)
A 		5.6
(-1.6)
A 		2
(-3)
A 		6.8
(-1.1)
A 		15
(2.2)
A 		15
B 9.8
(-0.2)
A 		15.3
(3)
A 		9.9
(-0.1)
A 		6.2
(-2.3)
A 		4.9
(-3)
A 		14.3
(2.4)
A 		10
C 3
(-3)
A 		9.7
(-0.8)
A 		3.5
(-2.8)
A 		8.1
(-1.3)
A 		5
(-2.3)
A 		21.3
(3)
A 		18
avr 10
(-0.6) 		13.1
(1) 		6.3
(-2.5) 		5.4
(-3) 		5.6
(-2.9) 		16.9
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.569
Sequence Type Exemplar sequence
Representative Public ID W06D4.5 NCBI
Target Description W06D4.5 /REP_DB=WormBase Gene ID /WP=CE16547 /TR=Q9XW41 /GB=CAA22253.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PhoX homologous domain, present in p47phox and p40phox.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060036 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-157) (tag-157) mRNA, complete cds. 11/11 None
SNAP00000003040 ENSEMBL cdna:SNAP chromosome:CEL140:I:9071858:9072522:-1 11/11 None
GENEFINDER00000003047 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9071858:9072522:-1 11/11 None
W06D4.5 ENSEMBL cdna:known chromosome:CEL140:I:9071858:9072522:-1 gene:W06D4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9071788-9072453(-) 100.0 100.0
Public Domain and Genome References
Gene Title PhoX homologous domain, present in p47phox and p40phox.
Gene Symbol tag-157
Ensembl W06D4.5
Entrez Gene 189240 Entrez gene
SwissProt Q9XW41 EMBL-EBI
WormBase CE16547 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.1635.1.S1_AT similar to Sorting nexin-12 (SDP8 protein) cfa
CANINE_2:CFAAFFX.25860.1.S1_AT similar to Sorting nexin-12 (SDP8 protein) cfa
DROSOPHILA_2:1638667_A_AT dm
DROSGENOME1:142180_AT dm
HG-U133_PLUS_2:231723_AT sorting nexin 12 hs
HG-U133B:231723_AT sorting nexin 12 hs
HG-U95C:56963_F_AT sorting nexin 12 hs
HU35KSUBA:AA215915_AT Sorting nexin 12 hs
HU35KSUBA:RC_AA285033_AT Sorting nexin 12 hs
U133_X3P:HS.5076.0.S1_3P_AT Sorting nexin 12 hs
U133_X3P:HS.287867.0.S1_3P_AT Sorting nexin 12 hs
HG-U133_PLUS_2:224684_AT Sorting nexin 12 hs
HG-U133B:224684_AT Sorting nexin 12 hs
HG-U95B:45797_AT Sorting nexin 12 hs
HG-U95C:51073_AT Sorting nexin 12 hs
HG-U95E:87899_AT Sorting nexin 12 hs
MOUSE430_2:1421797_A_AT sorting nexin 12 mm
MOE430A:1421797_A_AT sorting nexin 12 mm
MOUSE430A_2:1421797_A_AT sorting nexin 12 mm
MG-U74AV2:102319_AT sorting nexin 12 mm
MG-U74AV2:102320_AT sorting nexin 12 mm
MOE430A:1454807_A_AT sorting nexin 12 mm
MOUSE430A_2:1454807_A_AT sorting nexin 12 mm
MOUSE430_2:1454807_A_AT sorting nexin 12 mm
MG-U74CV2:165814_AT sorting nexin 12 mm
MU19KSUBB:TC27594_AT Sorting nexin 12, mRNA (cDNA clone MGC:5791 IMAGE:3592627) mm
MU19KSUBC:TC37484_AT Sorting nexin 12, mRNA (cDNA clone MGC:5791 IMAGE:3592627) mm
MU19KSUBC:TC37484_G_AT Sorting nexin 12, mRNA (cDNA clone MGC:5791 IMAGE:3592627) mm
MU19KSUBC:TC38267_AT Sorting nexin 12, mRNA (cDNA clone MGC:5791 IMAGE:3592627) mm
RG-U34B:RC_AA957665_AT similar to sorting nexin 12 rn
RG-U34C:RC_AA819636_AT similar to sorting nexin 12 rn
RAE230A:1371555_AT similar to sorting nexin 12 rn
RAT230_2:1371555_AT similar to sorting nexin 12 rn
RAE230B:1386250_AT similar to sorting nexin 12 rn
RAT230_2:1386250_AT similar to sorting nexin 12 rn
RAE230B:1381699_AT Similar to sorting nexin 12 rn
RAT230_2:1381699_AT Similar to sorting nexin 12 rn
RAE230B:1384410_AT Similar to sorting nexin 12 rn
RAT230_2:1384410_AT Similar to sorting nexin 12 rn
RAE230A:1390280_AT Similar to sorting nexin 12 rn
RAT230_2:1390280_AT Similar to sorting nexin 12 rn
RG-U34B:RC_AA964404_AT Similar to sorting nexin 12 rn
RG-U34B:RC_AI058910_AT Similar to sorting nexin 12 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22253 Hypothetical protein W06D4.5 [Caenorhabditis elegans] ref|NP_492437.1| Temporarily Assigned Gene name family member (tag-157) [Caenorhabditis elegans] 3.0E-88
blast CAE67032 Hypothetical protein CBG12434 [Caenorhabditis briggsae] 5.0E-84
blast XP_392658 PREDICTED: similar to CG6359-PA, isoform A [Apis mellifera] 4.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR001683 EMBL-EBI Phox-like 1.1E-35
Sequence
Target Sequence 
>C. ELEGANS:193831_AT
tcagcggatcccttcaaaacggcaaacgctggacgaggcatatgccccgccggccaactt
ccttgaaattgaggttatcaatcctatcactcatggtgttggaaaaatgcgctacacgga
ttacgaaatcagaatgagatcgaatctccccgttttcaagcagaaagaatcaagcgtgcg
tcgccgatacagtgatttcgaatgggttcgtgctgaactagagcgagatagcaagattgt
ggttccaacgttgccaggaaaatcattcaaacggcaactgccattccgatccgatgatgg
aatttttgaagaggaattcattgaaaataggcgcaaagctctcgagttattcatcaataa
ggttgctggacatccacttgctcaaaacgaacgctctctccatattttcctccaggagcc
aactattgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCGGATCCCTTCAAAACGGCAA 310 621 36 Antisense
AACGCTGGACGAGGCATATGCCCCG 274 145 60 Antisense
GCCGGCCAACTTCCTTGAAATTGAG 697 273 84 Antisense
AATCTCCCCGTTTTCAAGCAGAAAG 572 167 178 Antisense
AGAATCAAGCGTGCGTCGCCGATAC 476 75 201 Antisense
GATTGTGGTTCCAACGTTGCCAGGA 106 435 270 Antisense
CAAACGGCAACTGCCATTCCGATCC 595 189 303 Antisense
AATAGGCGCAAAGCTCTCGAGTTAT 491 173 361 Antisense
TGCTGGACATCCACTTGCTCAAAAC 355 583 399 Antisense
TTGCTCAAAACGAACGCTCTCTCCA 611 701 413 Antisense
TTCCTCCAGGAGCCAACTATTGACA 434 699 442 Antisense
Sequence Source Affymetrix Proprietary Database