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[193828_at] 7 transmembrane receptor (rhodopsin family) (2 domains)

Description F16D3.7 /REP_DB=WormBase Gene ID /WP=CE19797 /TR=Q9XTF5 /GB=CAB01500.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family) (2 domains)
Cluster 6grp_high1_10_10 > 14      6grp_total > 14      4grp_total > 47      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 349.5
(3)
P 		108.8
(-1.7)
A 		39.2
(-3)
A 		123.6
(-1.4)
A 		310
B 310.3
(3)
P 		134.5
(-1.4)
A 		71.6
(-3)
A 		92.5
(-2.5)
A 		239
C 405.2
(3)
P 		107
(-2.3)
A 		70.3
(-3)
A 		84.1
(-2.8)
A 		335
avr 355
(3) 		116.8
(-1.9) 		60.4
(-3) 		100.1
(-2.2) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 308.6
(3)
P 		220.5
(0.6)
P 		168.2
(-0.8)
P 		175.3
(-0.6)
A 		105.8
(-2.5)
A 		85.4
(-3)
A 		223
B 197.8
(2.1)
P 		194.7
(2)
P 		133.3
(-1)
P 		216
(3)
P 		143.4
(-0.5)
P 		92
(-3)
P 		124
C 254.3
(2.9)
P 		256.6
(3)
P 		131.4
(-1.3)
P 		160.3
(-0.3)
P 		107.3
(-2.1)
P 		81.9
(-3)
A 		175
avr 253.6
(3) 		223.9
(1.9) 		144.3
(-0.9) 		183.9
(0.5) 		118.8
(-1.8) 		86.4
(-3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 127.2
(3)
P 		23.6
(-2.3)
A 		10.3
(-3)
A 		18.1
(-2.6)
A 		117
B 99
(3)
P 		33.2
(-1.8)
A 		16.6
(-3)
A 		19.7
(-2.8)
A 		82
C 134.1
(3)
P 		30.8
(-2.2)
A 		24.5
(-2.5)
A 		14.2
(-3)
A 		120
avr 120.1
(3) 		29.2
(-2.3) 		17.1
(-3) 		17.3
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 56.9
(0.8)
P 		78.4
(3)
P 		36.6
(-1.4)
P 		44.4
(-0.5)
A 		31.9
(-1.8)
A 		20.8
(-3)
A 		58
B 68.8
(3)
P 		64.8
(2.3)
P 		32.4
(-3)
P 		57.2
(1.1)
P 		58.3
(1.3)
P 		34.3
(-2.7)
P 		36
C 94.3
(3)
P 		78.3
(1.6)
P 		33.5
(-2.5)
P 		32.2
(-2.6)
P 		34.7
(-2.3)
P 		27.4
(-3)
A 		67
avr 73.3
(2.9) 		73.8
(3) 		34.2
(-2.1) 		44.6
(-0.8) 		41.6
(-1.2) 		27.5
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193828_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1491
Sequence Type Exemplar sequence
Representative Public ID F16D3.7 NCBI
Target Description F16D3.7 /REP_DB=WormBase Gene ID /WP=CE19797 /TR=Q9XTF5 /GB=CAB01500.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family) (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059872 NCBI Caenorhabditis elegans F16D3.7 (F16D3.7) mRNA, complete cds. 11/11 None
SNAP00000004348 ENSEMBL cdna:SNAP chromosome:CEL140:I:8393277:8394952:1 9/11 None
GENEFINDER00000004353 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8393496:8394952:1 9/11 None
F16D3.7 ENSEMBL cdna:known chromosome:CEL140:I:8393105:8394798:1 gene:F16D3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8393035-8394729(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family) (2 domains)
Ensembl F16D3.7
Entrez Gene 184572 Entrez gene
SwissProt Q9XTF5 EMBL-EBI
WormBase CE19797 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01500 Hypothetical protein F16D3.7 [Caenorhabditis elegans] emb|CAA16515.1| Hypothetical protein F16D3.7 [Caenorhabditis elegans] ref|NP_492273.1| F16D3.7 [Caenorhabditis elegans] 0.0
blast CAE60436 Hypothetical protein CBG04044 [Caenorhabditis briggsae] 0.0
blast S71323 alpha-1A adrenergic receptor - Japanese medaka 4.0E-47
blast ABA01008 alpha-1D adrenoreceptor [Oncorhynchus mykiss] 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.0E-65
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.5E-56
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 5.4E-49
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.4E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492273.1 6 62-84,97-119,134-156,177-199,219-241,322-344
F16D3.7 6 62-84,97-119,134-156,177-199,219-241,322-344
SNAP00000004348 7 20-42,55-77,92-114,135-157,177-199,258-280,295-317
GENEFINDER00000004353 5 20-41,62-84,104-126,185-207,222-244
Sequence
Target Sequence 
>C. ELEGANS:193828_AT
aagacattgggtgtcgtctcttgctcatttctcttttgttggttgccatttttcgggtta
tatttgacaagtgagtatagtataataatttgtttcaagatcttttacccggtaactaat
cctatttcagattataaatgttctggttgtgttcctccgattgccatcgatgtagcaagt
tggttgggttactgtaattcaatgctcaatcccatcatctactcattcacagttaaagag
ttcaaacgttccgcattccggctcgtagtgccaatttggcaatttgtcaatcgatgttta
ccatttgttccagccccgcccgataatattttgcaaaggattgcaagacatgtacatagg
cataaggaaaaagtaagtcacacttttcttctgttttttcttcaaaatgtaatgtttcag
gaaatgcaaacaaggcaccgatcgtttgaaatgtcatcgaacaaaaatggaatgctgaca
acgaaagttcgatccaaaaggaggcaaactgaaccaaatgttgttgggctcattactcct
gatcataag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACATTGGGTGTCGTCTCTTGCT 426 153 973 Antisense
GTTGCCATTTTTCGGGTTATATTTG 274 439 1014 Antisense
TACCCGGTAACTAATCCTATTTCAG 208 645 1078 Antisense
TAAATGTTCTGGTTGTGTTCCTCCG 440 641 1107 Antisense
TTCCTCCGATTGCCATCGATGTAGC 215 699 1124 Antisense
AATTCAATGCTCAATCCCATCATCT 163 177 1168 Antisense
TCCCATCATCTACTCATTCACAGTT 406 597 1182 Antisense
CATTCCGGCTCGTAGTGCCAATTTG 458 217 1226 Antisense
GTAAGTCACACTTTTCTTCTGTTTT 269 463 1345 Antisense
AGGCACCGATCGTTTGAAATGTCAT 540 53 1405 Antisense
TGGGCTCATTACTCCTGATCATAAG 67 555 1497 Antisense
Sequence Source Affymetrix Proprietary Database