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[193826_at] 7 transmembrane receptor (rhodopsin family) (2 domains)

Description W05B5.2 /REP_DB=WormBase Gene ID /WP=CE19006 /TR=Q9XUK8 /GB=CAB04918.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family) (2 domains)
Cluster 6grp_total > 05      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 78.5
(3)
P 		47.4
(-2.5)
A 		44.4
(-3)
A 		75.8
(2.5)
A 		34
B 78.5
(3)
A 		62.2
(0.5)
A 		39.1
(-3)
A 		54.6
(-0.6)
A 		39
C 67.7
(3)
A 		36.9
(-2.9)
A 		36.4
(-3)
A 		63
(2.1)
A 		31
avr 74.9
(3) 		48.8
(-1.5) 		40
(-3) 		64.5
(1.2) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 100.5
(3)
A 		72.6
(1.3)
A 		42.7
(-0.6)
A 		28.3
(-1.5)
A 		46
(-0.4)
A 		4.2
(-3)
A 		96
B 65.9
(3)
A 		63.9
(2.8)
M 		21
(-1.4)
A 		23.8
(-1.1)
A 		52.1
(1.7)
A 		4.1
(-3)
A 		62
C 57.6
(3)
A 		44.3
(1.5)
A 		39.9
(1.1)
A 		6.7
(-2.6)
A 		3
(-3)
A 		18.2
(-1.3)
A 		55
avr 74.7
(3) 		60.3
(1.7) 		34.5
(-0.7) 		19.6
(-2) 		33.7
(-0.7) 		8.8
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 28.6
(3)
P 		10.3
(-3)
A 		11.6
(-2.6)
A 		11.1
(-2.7)
A 		18
B 25
(3)
A 		15.4
(-0.6)
A 		9.1
(-3)
A 		11.6
(-2.1)
A 		16
C 22.4
(3)
A 		10.6
(-3)
A 		12.7
(-1.9)
A 		10.6
(-3)
A 		12
avr 25.3
(3) 		12.1
(-2.6) 		11.1
(-3) 		11.1
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 18.5
(1.2)
A 		25.8
(3)
A 		9.3
(-1)
A 		7.2
(-1.5)
A 		13.9
(0.1)
A 		1
(-3)
A 		25
B 22.9
(3)
A 		21.3
(2.6)
M 		5.1
(-2)
A 		6.3
(-1.7)
A 		21.2
(2.5)
A 		1.5
(-3)
A 		21
C 21.4
(3)
A 		13.5
(0.7)
A 		10.2
(-0.3)
A 		1.4
(-2.9)
A 		1
(-3)
A 		6.1
(-1.5)
A 		20
avr 20.9
(3) 		20.2
(2.8) 		8.2
(-1.2) 		5
(-2.3) 		12
(0) 		2.9
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1216
Sequence Type Exemplar sequence
Representative Public ID W05B5.2 NCBI
Target Description W05B5.2 /REP_DB=WormBase Gene ID /WP=CE19006 /TR=Q9XUK8 /GB=CAB04918.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family) (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060882 NCBI Caenorhabditis elegans W05B5.2 (W05B5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000033661 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13058581:13063862:1 11/11 None
W05B5.2 ENSEMBL cdna:known chromosome:CEL140:I:13058581:13063383:1 gene:W05B5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13058511-13063314(+) 98.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family) (2 domains)
Ensembl W05B5.2
Entrez Gene 189211 Entrez gene
WormBase CE38879 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493283 W05B5.2 [Caenorhabditis elegans] 0.0
blast CAB04918 Hypothetical protein W05B5.2 [Caenorhabditis elegans] 0.0
blast CAB04918 Hypothetical protein W05B5.2 [Caenorhabditis elegans] 1.0E-170
blast CAE63461 Hypothetical protein CBG07927 [Caenorhabditis briggsae] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.0E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493283.1 6 49-71,103-125,145-162,183-205,240-262,283-305
W05B5.2 6 49-71,103-125,145-162,183-205,240-262,283-305
GENEFINDER00000033661 6 49-71,103-125,145-162,183-205,240-262,283-305
Sequence
Target Sequence 
>C. ELEGANS:193826_AT
ttggttcattgcaatgttcctctcgtcgccggagcccgtcacgctacatctcgccggagc
cccatttgtgcgacctaattttacaacaaagtggggaacacgttgcaaggaatcgtggtc
agaagaattccagaaaaactatcaactactacagacaattttctcatttgtacttccact
tcttgtcatatcaattttatgtctgcatatggtccgaaccttgcatttctctgcaaatta
cttgacagtagcaaaccgacaaatcagcatacgaaaaaaagcggtccggatgctatgtgc
agtggtttttctcttctcaatgtctaatctacctgttcatttgtacaatattgcgctaaa
ctacgatttactgtcaacggatgtgagcactaatacaattgcagttcggaagctcctgcc
acgcgttttttcatattcttcatcatgtctcaaccccattctgtacagctttctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTTCATTGCAATGTTCCTCTCG 429 709 570 Antisense
AATTTTCTCATTTGTACTTCCACTT 697 173 726 Antisense
TACTTCCACTTCTTGTCATATCAAT 463 645 740 Antisense
ATATGGTCCGAACCTTGCATTTCTC 650 17 776 Antisense
AAGCGGTCCGGATGCTATGTGCAGT 535 147 848 Antisense
TATGTGCAGTGGTTTTTCTCTTCTC 90 657 863 Antisense
TTCTCTTCTCAATGTCTAATCTACC 273 691 878 Antisense
ATTGCAGTTCGGAAGCTCCTGCCAC 517 3 967 Antisense
CACGCGTTTTTTCATATTCTTCATC 700 199 989 Antisense
CATATTCTTCATCATGTCTCAACCC 158 215 1001 Antisense
AACCCCATTCTGTACAGCTTTCTAA 89 147 1021 Antisense
Sequence Source Affymetrix Proprietary Database