[Home] | [Total List]

[193825_at] A. californica buccalin precursor (weak)

Description C01C4.1 /REP_DB=WormBase Gene ID /WP=CE03887 /GEN=nlp-1 /TR=SW:Q11088 /GB=AAA82349.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=A. californica buccalin precursor (weak)
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 86      6grp_total > 08      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3310
1 2 3 4 range
A 1598
(-1.3)
P 		926.2
(-2.5)
P 		640
(-3)
P 		3950
(3)
P 		3310
B 1682.3
(-1)
P 		1024.3
(-2.4)
P 		732.4
(-3)
P 		3654.9
(3)
P 		2923
C 1646.9
(-0.8)
P 		949.1
(-2.4)
P 		666.6
(-3)
P 		3355.5
(3)
P 		2689
avr 1642.4
(-1.1) 		966.5
(-2.4) 		679.7
(-3) 		3653.5
(3) 		2974

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 521
1 2 3 4 5 6 range
A 1308
(3)
P 		946.4
(-1.4)
P 		943.5
(-1.5)
P 		903.6
(-1.9)
P 		817.4
(-3)
P 		889.9
(-2.1)
P 		491
B 1088.6
(2.3)
P 		903.1
(-1.9)
P 		1120
(3)
P 		854
(-3)
P 		975.8
(-0.3)
P 		1023.2
(0.8)
P 		266
C 1074.7
(2.9)
P 		877.2
(-1.2)
P 		927.5
(-0.1)
P 		913.1
(-0.4)
P 		786.8
(-3)
P 		1080.1
(3)
P 		293
avr 1157.1
(3) 		908.9
(-2) 		997
(-0.2) 		890.2
(-2.4) 		860
(-3) 		997.7
(-0.2) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 612
1 2 3 4 range
A 581.8
(3)
P 		201
(-2.5)
P 		167.3
(-3)
P 		578.2
(2.9)
P 		415
B 536.5
(0.6)
P 		253
(-2.2)
P 		169.7
(-3)
P 		778.9
(3)
P 		609
C 545.2
(2.6)
P 		272.9
(-2.3)
P 		232.3
(-3)
P 		565.8
(3)
P 		334
avr 554.5
(1.8) 		242.3
(-2.3) 		189.8
(-3) 		641
(3) 		451

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 241.1
(-1.4)
P 		336.6
(3)
P 		205.5
(-3)
P 		229.2
(-1.9)
P 		246.7
(-1.1)
P 		216.7
(-2.5)
P 		131
B 378.8
(2.4)
P 		300.6
(-0.4)
P 		272
(-1.4)
P 		226.2
(-3)
P 		396.4
(3)
P 		381.5
(2.5)
P 		170
C 398.3
(3)
P 		267.7
(-0.6)
P 		236.1
(-1.5)
P 		183.6
(-3)
P 		254.6
(-1)
P 		361.6
(2)
P 		215
avr 339.4
(3) 		301.6
(1.2) 		237.9
(-1.8) 		213
(-3) 		299.2
(1.1) 		319.9
(2.1) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18182
Sequence Type Exemplar sequence
Representative Public ID C01C4.1 NCBI
Target Description C01C4.1 /REP_DB=WormBase Gene ID /WP=CE03887 /GEN=nlp-1 /TR=SW:Q11088 /GB=AAA82349.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=A. californica buccalin precursor (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076239 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-1) (nlp-1) mRNA, complete cds. 11/11 None
C01C4.1 ENSEMBL cdna:known chromosome:CEL140:X:3727560:3728422:1 gene:C01C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3727579-3728197(+) 100.0 100.0
Public Domain and Genome References
Gene Title A. californica buccalin precursor (weak)
Gene Symbol nlp-1
Ensembl C01C4.1
Entrez Gene 180661 Entrez gene
SwissProt Q11088 EMBL-EBI
WormBase CE29554 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82349 Neuropeptide-like protein protein 1 [Caenorhabditis elegans] ref|NP_508640.1| Neuropeptide-Like Protein family member (nlp-1) [Caenorhabditis elegans] sp|Q11088|YWY1_CAEEL Hypothetical protein C01C4.1 in chromosome X precursor 3.0E-96
blast T34076 hypothetical protein C01C4.1 - Caenorhabditis elegans 4.0E-85
blast CAE68476 Hypothetical protein CBG14276 [Caenorhabditis briggsae] 4.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508640.1 1 5-22
C01C4.1 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:193825_AT
aaagccacattcgtgctggcatgtcttcttgtgatagctgctgtttcccatgccgatctc
ctaccaaaacgaatggacgcaaatgctttccgcatgtcgtttggcaaacgtagcgtatcc
aatccagcagaggcaaaacgaatggatccaaacgctttcagaatgtccttcgggaaacga
tcagccgagcagaatgagcaagctaataaggaagacaaagcgacatccgacaagctctac
gacgacaccaaatttgaggagatgaagcgcatggacgccaacgcttttcgcatgtcgttt
ggaaaacgctcggatgctcatcaagccgccgatgatcaggtcgagtacgtgaatgatgac
ttttcactccctgagcaaaaacgtatggatgccaatgcgttccgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCACATTCGTGCTGGCATGTC 432 123 16 Antisense
TTGTGATAGCTGCTGTTTCCCATGC 49 709 44 Antisense
GACGCAAATGCTTTCCGCATGTCGT 625 379 91 Antisense
GTAGCGTATCCAATCCAGCAGAGGC 577 457 125 Antisense
AACGCTTTCAGAATGTCCTTCGGGA 555 143 166 Antisense
ACAAGCTCTACGACGACACCAAATT 481 113 245 Antisense
CCAACGCTTTTCGCATGTCGTTTGG 594 275 293 Antisense
AAACGCTCGGATGCTCATCAAGCCG 366 125 319 Antisense
CAAGCCGCCGATGATCAGGTCGAGT 230 187 337 Antisense
TGAATGATGACTTTTCACTCCCTGA 453 575 365 Antisense
GTATGGATGCCAATGCGTTCCGCAT 246 455 398 Antisense
Sequence Source Affymetrix Proprietary Database