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[193822_at] A. faecalis PHB depolymerase; zinc finger protein 40

Description T19D12.1 /REP_DB=WormBase Gene ID /WP=CE04976 /TR=Q22579 /GB=AAC24428.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=A. faecalis PHB depolymerase; zinc finger protein 40
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 21      6grp_total > 25      4grp_total > 59      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2022
1 2 3 4 range
A 1646.1
(1)
P 		2301.5
(3)
P 		1907.8
(1.8)
P 		366.9
(-3)
P 		1935
B 1551.8
(1.3)
P 		1900.8
(2.5)
P 		2041.3
(3)
P 		279.1
(-3)
P 		1762
C 1566.6
(1.5)
P 		1917.8
(2.8)
P 		1972.5
(3)
P 		301
(-3)
P 		1672
avr 1588.2
(1.4) 		2040
(3) 		1973.9
(2.8) 		315.7
(-3) 		1724

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2004
1 2 3 4 5 6 range
A 1862.8
(0.8)
P 		2542.8
(3)
P 		832.2
(-2.5)
P 		742.4
(-2.8)
P 		684.2
(-3)
P 		673.8
(-3)
P 		1869
B 1517.3
(1.2)
P 		1937.1
(3)
P 		1214
(-0.1)
P 		692.3
(-2.3)
P 		538.8
(-3)
P 		645.4
(-2.5)
P 		1398
C 1370.2
(0.3)
P 		1980.3
(3)
P 		1134.5
(-0.7)
P 		618.4
(-3)
P 		668
(-2.8)
P 		659.6
(-2.8)
P 		1362
avr 1583.4
(0.8) 		2153.4
(3) 		1060.2
(-1.3) 		684.4
(-2.8) 		630.3
(-3) 		659.6
(-2.9) 		1523
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 637
1 2 3 4 range
A 599.3
(3)
P 		499.6
(1.9)
P 		498.7
(1.9)
P 		53.7
(-3)
P 		546
B 494.8
(3)
P 		469.5
(2.7)
P 		473
(2.7)
P 		59.5
(-3)
P 		435
C 518.6
(1.4)
P 		551.4
(1.7)
P 		687.5
(3)
P 		50.8
(-3)
P 		637
avr 537.6
(2.8) 		506.8
(2.4) 		553.1
(3) 		54.7
(-3) 		498

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 780
1 2 3 4 5 6 range
A 343.4
(-1.5)
P 		904.3
(3)
P 		181.2
(-2.9)
P 		188.3
(-2.8)
P 		206.5
(-2.7)
P 		164
(-3)
P 		740
B 527.9
(1.5)
P 		644.8
(3)
P 		294.8
(-1.6)
P 		183.4
(-3)
P 		218.9
(-2.5)
P 		240.7
(-2.3)
P 		461
C 507.9
(1.8)
P 		604.3
(3)
P 		288.8
(-0.9)
P 		124.4
(-3)
P 		216.2
(-1.9)
P 		220.8
(-1.8)
P 		480
avr 459.7
(0.2) 		717.8
(3) 		254.9
(-2) 		165.4
(-3) 		213.9
(-2.5) 		208.5
(-2.5) 		552
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193822_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5364
Sequence Type Exemplar sequence
Representative Public ID T19D12.1 NCBI
Target Description T19D12.1 /REP_DB=WormBase Gene ID /WP=CE04976 /TR=Q22579 /GB=AAC24428.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=A. faecalis PHB depolymerase; zinc finger protein 40
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062956 NCBI Caenorhabditis elegans T19D12.1 (T19D12.1) mRNA, complete cds. 11/11 A 
SNAP00000041409 ENSEMBL cdna:SNAP chromosome:CEL140:II:6667018:6673294:1 11/11 None
GENEFINDER00000041412 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6667512:6673294:1 11/11 None
T19D12.1 ENSEMBL cdna:known chromosome:CEL140:II:6666863:6673690:1 gene:T19D12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6666859-6673043(+) 100.0 100.0
Public Domain and Genome References
Gene Title A. faecalis PHB depolymerase; zinc finger protein 40
Ensembl T19D12.1
Entrez Gene 174100 Entrez gene
SwissProt Q22579 EMBL-EBI
WormBase CE28677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24428 Hypothetical protein T19D12.1 [Caenorhabditis elegans] ref|NP_495357.1| T19D12.1 [Caenorhabditis elegans] 0.0
blast AAO38594 Hypothetical protein T19D12.2b [Caenorhabditis elegans] ref|NP_872039.1| T19D12.2b [Caenorhabditis elegans] 0.0
blast AAO38595 Hypothetical protein T19D12.2c [Caenorhabditis elegans] ref|NP_872040.1| T19D12.2c [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495357.1 1 13-35
T19D12.1 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:193822_AT
gatcatcatccactcaatctattccatcatcaactgcggcaaacacagggtcgtccacta
gtggtccaactgtagcaactacacaaggatcctcttcaacgcagacaaattccaatactg
gatcaaccactgtagccacaactgttacacaaggatcttcaactggaggtaactctggat
caactactgtaaattttcaaagcagtagtgttgcatcaacagtagcatccagtacagcta
acatcgaatcatccacgactccaattccaacatgtgcatcaccatatagtggaaagattg
caactgtttttgaattgaatgcaaatagtgccacgaatattgtaaactttgtgagcaata
atttgtacaactcagccaactatgattttactaatagtacagaagcaattaatgtaccgt
atgggcaaaccgatcattatgccacccagattttgcagtataatggaacaaagagtttat
cgaatcttcaggacaacgtgtctgacttattgaccagtgccattttgctaatcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATCATCCACTCAATCTATTCC 300 421 4721 Antisense
TTCCATCATCAACTGCGGCAAACAC 34 701 4742 Antisense
AACACAGGGTCGTCCACTAGTGGTC 287 133 4762 Antisense
AGGATCCTCTTCAACGCAGACAAAT 333 57 4806 Antisense
TGGATCAACCACTGTAGCCACAACT 279 551 4839 Antisense
GCATCCAGTACAGCTAACATCGAAT 494 307 4945 Antisense
ACATCGAATCATCCACGACTCCAAT 326 107 4961 Antisense
GACTCCAATTCCAACATGTGCATCA 489 375 4977 Antisense
GATCATTATGCCACCCAGATTTTGC 93 421 5152 Antisense
GTGTCTGACTTATTGACCAGTGCCA 365 487 5218 Antisense
GACCAGTGCCATTTTGCTAATCGAT 676 383 5232 Antisense
Sequence Source Affymetrix Proprietary Database