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[193820_s_at]

Description T05H10.7 /REP_DB=WormBase Gene ID /WP=CE03637 /TR=SW:Q10003 /GB=CAA87796.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glycerophosphoryl diester phosphodiesterase domain
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 86      6grp_total > 95      4grp_total > 62      6grp_high1_sub > 04      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 802
1 2 3 4 range
A 1217.8
(3)
P 		1093.5
(1.8)
P 		929.6
(0.3)
P 		585.4
(-3)
P 		632
B 1387.8
(3)
P 		1024.8
(0)
P 		1003.2
(-0.2)
P 		659.9
(-3)
P 		728
C 1215.3
(3)
P 		895.2
(-0.6)
P 		1122
(2)
P 		679.2
(-3)
P 		536
avr 1273.6
(3) 		1004.5
(0.4) 		1018.3
(0.6) 		641.5
(-3) 		632

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 937.7
(0.6)
P 		715.1
(-1.8)
P 		606.9
(-3)
P 		1152.9
(3)
P 		1024.3
(1.6)
P 		1129.8
(2.7)
P 		546
B 924.4
(0.5)
P 		724.2
(-3)
P 		856.9
(-0.7)
P 		1059.6
(2.8)
P 		920.7
(0.4)
P 		1071.2
(3)
P 		347
C 849.9
(-0.4)
P 		648.1
(-3)
P 		765.5
(-1.5)
P 		823.3
(-0.7)
P 		1109.6
(3)
P 		988.7
(1.4)
P 		462
avr 904
(0.4) 		695.8
(-3) 		743.1
(-2.2) 		1011.9
(2.2) 		1018.2
(2.3) 		1063.2
(3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 358
1 2 3 4 range
A 443.4
(3)
P 		237.4
(-0.5)
P 		243
(-0.4)
P 		85.7
(-3)
P 		358
B 442.5
(3)
P 		253.1
(-0.8)
P 		232.5
(-1.2)
P 		140.6
(-3)
P 		302
C 402.3
(3)
P 		257.4
(-0)
P 		391
(2.8)
P 		114.5
(-3)
P 		288
avr 429.4
(3) 		249.3
(-0.4) 		288.8
(0.3) 		113.6
(-3) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 172.9
(-1.6)
P 		254.3
(1.1)
P 		132.2
(-3)
P 		292.4
(2.4)
P 		309.1
(3)
P 		275.1
(1.8)
P 		177
B 321.6
(0.6)
P 		241.1
(-2)
P 		208.1
(-3)
P 		280.7
(-0.7)
P 		374.1
(2.2)
P 		399.5
(3)
P 		191
C 315
(1.6)
P 		197.8
(-2)
P 		194.8
(-2.1)
P 		165.6
(-3)
P 		359
(3)
P 		331
(2.1)
P 		193
avr 269.8
(0.2) 		231.1
(-1.1) 		178.4
(-3) 		246.2
(-0.6) 		347.4
(3) 		335.2
(2.6) 		169
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193820_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3808
Sequence Type Exemplar sequence
Representative Public ID T05H10.7 NCBI
Target Description T05H10.7 /REP_DB=WormBase Gene ID /WP=CE03637 /TR=SW:Q10003 /GB=CAA87796.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glycerophosphoryl diester phosphodiesterase domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027151(11), NM_001027150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027151 NCBI Caenorhabditis elegans T05H10.7b (T05H10.7) mRNA, complete cds. 11/11 None
NM_001027150 NCBI Caenorhabditis elegans T05H10.7a (T05H10.7) mRNA, complete cds. 11/11 None
T05H10.7b.1 ENSEMBL cdna:known chromosome:CEL140:II:8067919:8070609:-1 gene:T05H10.7 11/11 None
T05H10.7b.2 ENSEMBL cdna:known chromosome:CEL140:II:8068034:8073282:-1 gene:T05H10.7 11/11 None
T05H10.7b.3 ENSEMBL cdna:known chromosome:CEL140:II:8068154:8070611:-1 gene:T05H10.7 11/11 None
T05H10.7a ENSEMBL cdna:known chromosome:CEL140:II:8068154:8073293:-1 gene:T05H10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8068150-8073290(-) 100.0 100.0
Public Domain and Genome References
Ensembl T05H10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE48507 Hypothetical protein T05H10.7b [Caenorhabditis elegans] emb|CAE48505.1| Hypothetical protein T05H10.7b [Caenorhabditis elegans] ref|NP_001022322.1| T05H10.7b [Caenorhabditis elegans] 0.0
blast CAA87796 Hypothetical protein T05H10.7a [Caenorhabditis elegans] emb|CAA87788.1| Hypothetical protein T05H10.7a [Caenorhabditis elegans] ref|NP_001022321.1| T05H10.7a [Caenorhabditis elegans] sp|Q10003|YRS7_CAEEL Hypothetical protein T05H10.7 in chromosome II 0.0
blast CAE67763 Hypothetical protein CBG13338 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 7.1E-108
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 7.1E-108
Sequence
Target Sequence 
>C. ELEGANS:193820_S_AT
gaatcatgttcagcagcttcgatccagatatttgctccatggttgccacgaaacaaaata
aatatccagtgctgttcctctgtgttggtgaaactcaacgatatactcctttccaagatc
aaagaactagtacttcaatgactgctgttaattttgcagctggagctgatcttctgggag
ttaatttcaattccgaagatttgctgaaagatccaatgcctgtgaagaaggcaaacgagt
ttggcatggtcacatttgtctggggagaagatctcgacaagaaagaaaatatcaactatt
tcaaaaaggagcttggtgtcgatggagttatttatgatagaatcggagaagaggaacgtc
gtcgtaatgtattcatcgtcgaaagagaacaaaaacgtgctcttctcagctgctctggtg
ccagcactccgcaacgagctgcatcaccatctccagtttcttctgaaaacaataatacat
ctcctccacacagcgccaaattaacacgtaacgcacaatctgattcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATGTTCAGCAGCTTCGATCC 35 329 1781 Antisense
GCTTCGATCCAGATATTTGCTCCAT 143 307 1796 Antisense
TTTGCTCCATGGTTGCCACGAAACA 228 667 1811 Antisense
AAATATCCAGTGCTGTTCCTCTGTG 299 117 1840 Antisense
AACTCAACGATATACTCCTTTCCAA 217 139 1872 Antisense
CTGGAGCTGATCTTCTGGGAGTTAA 123 241 1940 Antisense
GGCATGGTCACATTTGTCTGGGGAG 330 537 2023 Antisense
ACAAAAACGTGCTCTTCTCAGCTGC 704 111 2169 Antisense
TCACCATCTCCAGTTTCTTCTGAAA 109 627 2224 Antisense
AAAACAATAATACATCTCCTCCACA 329 129 2246 Antisense
ACACGTAACGCACAATCTGATTCGG 411 109 2284 Antisense
Sequence Source Affymetrix Proprietary Database