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[193819_at]

Description F49A5.5 /REP_DB=WormBase Gene ID /WP=CE16068 /TR=O45532 /GB=CAB04417.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      6grp_highest_nonorm > 90      6grp_total > 03      4grp_total > 59      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 119.3
(2.3)
P 		104.4
(1.2)
P 		129.6
(3)
P 		44.6
(-3)
A 		85
B 110.5
(0.8)
P 		136.1
(2.4)
P 		146.7
(3)
P 		48
(-3)
A 		99
C 108.2
(0.5)
P 		130.6
(1.9)
P 		149
(3)
P 		52.6
(-3)
A 		96
avr 112.7
(1.1) 		123.7
(1.8) 		141.8
(3) 		48.4
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 81.7
(-0.3)
P 		119.7
(3)
P 		55.9
(-2.6)
P 		95.2
(0.9)
P 		65.7
(-1.7)
P 		51.3
(-3)
P 		68
B 87.8
(0.5)
P 		97.8
(1.5)
P 		50
(-3)
P 		114.4
(3)
P 		73.1
(-0.8)
P 		51.9
(-2.8)
P 		64
C 77.4
(-1.6)
P 		127.6
(3)
P 		124.6
(2.7)
P 		87.1
(-0.8)
P 		69.9
(-2.3)
P 		62.8
(-3)
P 		65
avr 82.3
(-0.3) 		115
(3) 		76.8
(-0.8) 		98.9
(1.4) 		69.6
(-1.6) 		55.3
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 43.4
(3)
P 		22.7
(-0.4)
P 		33.9
(1.5)
P 		6.5
(-3)
A 		37
B 35.2
(3)
P 		33.6
(2.6)
P 		34
(2.7)
P 		10.2
(-3)
A 		25
C 35.8
(0.8)
P 		37.6
(1)
P 		51.9
(3)
P 		8.9
(-3)
A 		43
avr 38.1
(2.7) 		31.3
(1.4) 		39.9
(3) 		8.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 15.1
(-2.4)
P 		42.6
(3)
P 		12.2
(-3)
P 		24.1
(-0.7)
P 		19.8
(-1.5)
P 		12.5
(-2.9)
P 		30
B 30.5
(2.4)
P 		32.6
(3)
P 		12.1
(-3)
P 		30.3
(2.3)
P 		29.7
(2.2)
P 		19.3
(-0.9)
P 		21
C 28.7
(0.1)
P 		38.9
(3)
P 		31.7
(1)
P 		17.5
(-3)
P 		22.6
(-1.6)
P 		21
(-2)
P 		21
avr 24.8
(-0.9) 		38
(3) 		18.7
(-2.7) 		24
(-1.1) 		24
(-1.1) 		17.6
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193819_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13342
Sequence Type Exemplar sequence
Representative Public ID F49A5.5 NCBI
Target Description F49A5.5 /REP_DB=WormBase Gene ID /WP=CE16068 /TR=O45532 /GB=CAB04417.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028779(11), NM_001028780(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028779 NCBI Caenorhabditis elegans C-type LECtin family member (clec-28) (clec-28) mRNA, complete cds. 11/11 None
NM_001028780 NCBI Caenorhabditis elegans C-type LECtin family member (clec-28) (clec-28) mRNA, complete cds. 11/11 None
SNAP00000001316 ENSEMBL cdna:SNAP chromosome:CEL140:V:16868322:16869807:1 11/11 None
GENEFINDER00000001323 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16861010:16870068:1 9/11 None
F49A5.5 ENSEMBL cdna:known chromosome:CEL140:V:16868322:16869807:1 gene:F49A5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16868321-16869807(+) 100.0 100.0
Public Domain and Genome References
Ensembl F49A5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04417 Hypothetical protein F49A5.5a [Caenorhabditis elegans] ref|NP_001023950.1| C-type LECtin family member (clec-28) [Caenorhabditis elegans] 0.0
blast CAI79191 Hypothetical protein F49A5.5b [Caenorhabditis elegans] ref|NP_001023951.1| C-type LECtin family member (clec-28) [Caenorhabditis elegans] 0.0
blast CAI79191 Hypothetical protein F49A5.5b [Caenorhabditis elegans] ref|NP_001023951.1| C-type LECtin family member (clec-28) [Caenorhabditis elegans] 1.0E-153
blast CAB04417 Hypothetical protein F49A5.5a [Caenorhabditis elegans] ref|NP_001023950.1| C-type LECtin family member (clec-28) [Caenorhabditis elegans] 1.0E-153
blast CAB04417 Hypothetical protein F49A5.5a [Caenorhabditis elegans] ref|NP_001023950.1| C-type LECtin family member (clec-28) [Caenorhabditis elegans] 1.0E-116
blast CAI79191 Hypothetical protein F49A5.5b [Caenorhabditis elegans] ref|NP_001023951.1| C-type LECtin family member (clec-28) [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-10
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-4
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-10
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-4
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-10
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-4
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-8
Pfam IPR001304 EMBL-EBI C-type lectin 6.0E-5
Pfam IPR001304 EMBL-EBI C-type lectin 6.3E-7
Pfam IPR001304 EMBL-EBI C-type lectin 5.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023950.1 1 36-58
NP_001023951.1 1 36-58
F49A5.5 1 36-58
SNAP00000001316 1 36-58
GENEFINDER00000001323 6 36-58,325-342,347-366,378-400,428-450,856-878
Sequence
Target Sequence 
>C. ELEGANS:193819_AT
gcacgttgagaacctttggaccggattaaactgcgtcgggataaacccgtttacgtgtac
ctgggatgtcaaaagcggaaccacctccgcctacaataactttgccgatggttatccgaa
taacatggctggaggttgcatttattacaagactactggaacgcaagccgggcaatggtc
aagtggatcgtgtaatgagattatgagttttgtgtgcgagctaccagcaaccatttacga
tagcacctgcaaatacaactacaacaactattgttacaccccatacgatcagctgcaaat
ctccagcgatgcgcagagcatctgcgcatcatcgggttccaatttggccacaattcattc
tgcaaatgaaaaccgctttttcatgggcatctttccttcgttttcaatgattgcacttgg
cggagttgctttgtcaggcgacaaggtcatatggtatgatggaacaccttcaacttacac
aaatataagaacgcttacacgagggaactgtattctgctctcaaatgatgtcggacgctg
ggatggttaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGTTGAGAACCTTTGGACCGGA 472 309 450 Antisense
CCTCCGCCTACAATAACTTTGCCGA 241 267 533 Antisense
GCCGGGCAATGGTCAAGTGGATCGT 581 197 616 Antisense
CCAGCAACCATTTACGATAGCACCT 154 273 673 Antisense
AATTTGGCCACAATTCATTCTGCAA 139 175 790 Antisense
GAAAACCGCTTTTTCATGGGCATCT 341 355 817 Antisense
GCATCTTTCCTTCGTTTTCAATGAT 672 307 836 Antisense
TTGGCGGAGTTGCTTTGTCAGGCGA 561 705 866 Antisense
GGAACACCTTCAACTTACACAAATA 299 529 910 Antisense
GAGGGAACTGTATTCTGCTCTCAAA 17 403 950 Antisense
GATGTCGGACGCTGGGATGGTTACA 445 407 976 Antisense
Sequence Source Affymetrix Proprietary Database