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[193816_at]

Description T01G9.5 /REP_DB=WormBase Gene ID /WP=CE06342 /GEN=mei-1 /TR=SW:P34808 /GB=CAB00052.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=MEI-1 meiotic spindle formation protein
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 93      6grp_total > 88      4grp_total > 40      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 300.9
(0.6)
P 		243.5
(-3)
P 		339.1
(3)
P 		263.7
(-1.7)
P 		96
B 270.3
(-3)
P 		274.1
(-2.4)
P 		306.4
(3)
P 		284
(-0.7)
P 		36
C 263.8
(-2.3)
P 		248.7
(-3)
P 		372.8
(3)
P 		324.8
(0.7)
P 		124
avr 278.3
(-1.4) 		255.4
(-3) 		339.4
(3) 		290.8
(-0.5) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 595
1 2 3 4 5 6 range
A 260.5
(-2.4)
P 		245.4
(-2.6)
P 		216.7
(-3)
P 		261.3
(-2.4)
P 		569.6
(1.7)
P 		670.3
(3)
P 		454
B 299
(-2.9)
P 		317.7
(-2.7)
P 		292.8
(-3)
P 		360.1
(-2.1)
P 		635.1
(1.7)
P 		733.7
(3)
P 		441
C 279.1
(-2.8)
P 		260.3
(-3)
P 		263.9
(-3)
P 		317.6
(-2.4)
P 		450.1
(-0.9)
P 		811.7
(3)
P 		551
avr 279.5
(-2.7) 		274.5
(-2.8) 		257.8
(-3) 		313
(-2.3) 		551.6
(0.7) 		738.6
(3) 		481
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 109.6
(3)
P 		52.9
(-1.8)
P 		88.7
(1.2)
P 		38.6
(-3)
P 		71
B 86.2
(3)
P 		67.7
(-1.3)
P 		71
(-0.5)
P 		60.5
(-3)
P 		26
C 87.3
(-0.4)
P 		71.5
(-1.7)
P 		129.9
(3)
P 		54.8
(-3)
P 		75
avr 94.4
(2.7) 		64
(-1.3) 		96.5
(3) 		51.3
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 48
(-3)
P 		87.3
(-1.1)
P 		47.2
(-3)
P 		66.3
(-2.1)
P 		171.9
(3)
P 		163.2
(2.6)
P 		125
B 104
(-2)
P 		105.8
(-2)
P 		71.1
(-3)
P 		95.4
(-2.3)
P 		258
(2.5)
P 		273.6
(3)
P 		203
C 103.5
(-1.9)
P 		79.4
(-2.6)
P 		67.2
(-2.9)
P 		63.9
(-3)
P 		145.6
(-0.6)
P 		271.7
(3)
P 		208
avr 85.2
(-2.2) 		90.8
(-2) 		61.8
(-3) 		75.2
(-2.5) 		191.8
(1.5) 		236.2
(3) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1673
Sequence Type Exemplar sequence
Representative Public ID T01G9.5 NCBI
Target Description T01G9.5 /REP_DB=WormBase Gene ID /WP=CE06342 /GEN=mei-1 /TR=SW:P34808 /GB=CAB00052.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=MEI-1 meiotic spindle formation protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181993(11), NM_059856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181993 NCBI Caenorhabditis elegans defective MEIosis family member (mei-1) (mei-1) mRNA, complete cds. 11/11 None
NM_059856 NCBI Caenorhabditis elegans defective MEIosis family member (mei-1) (mei-1) mRNA, complete cds. 11/11 None
SNAP00000040995 ENSEMBL cdna:SNAP chromosome:CEL140:I:8303006:8304848:1 11/11 None
GENEFINDER00000040996 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8303006:8304848:1 11/11 None
T01G9.5a ENSEMBL cdna:known chromosome:CEL140:I:8303005:8305020:1 gene:T01G9.5 11/11 None
T01G9.5b ENSEMBL cdna:known chromosome:CEL140:I:8303006:8305020:1 gene:T01G9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8302936-8304779(+) 100.0 100.0
Public Domain and Genome References
Ensembl T01G9.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56596 Hypothetical protein T01G9.5b [Caenorhabditis elegans] ref|NP_871793.1| defective MEIosis family member (mei-1) [Caenorhabditis elegans] 0.0
blast CAB00052 Hypothetical protein T01G9.5a [Caenorhabditis elegans] ref|NP_492257.1| defective MEIosis family member (mei-1) [Caenorhabditis elegans] sp|P34808|MEI1_CAEEL Meiotic spindle formation protein mei-1 (Katanin ATPase-containing subunit) gb|AAA28109.1| mei-1 0.0
blast CAE60474 Hypothetical protein CBG04086 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 3.6E-82
Sequence
Target Sequence 
>C. ELEGANS:193816_AT
gcaagtggcgtggtgattccgagaagattgttcgtctgttattcgaacttgcacggttct
atgctccatccataatcttcatcgatgagattgacacacttggtggacaacgtggaaatt
ctggagaacacgaagcgagtcggcgtgttaaatccgagtttctggtacaaatggacgggt
cacagaataaattcgattcgcgacgtgtattcgtgctggccgccacaaatattccatggg
agctcgatgaggcactccgaagacgtttcgaaaagcgaatcttcattccactgccagata
tagatgcaagaaagaagcttatcgaaaaatcaatggaaggaactccgaaatccgatgaaa
ttaactatgatgacttggcggcaaggactgaaggattctcaggagctgatgttgtgtctc
tatgcagaactgctgctatcaatgtgttgagaagatacgacaccaaatcattgcgaggcg
gggaactgacagctgcaatggaatcactgaaagccgaactcgtgaggaacattgactttg
aagcagctcttcaagcagtttcaccaagtgctggtccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTGGCGTGGTGATTCCGAGAA 677 319 803 Antisense
CGAACTTGCACGGTTCTATGCTCCA 473 253 846 Antisense
TGCTCCATCCATAATCTTCATCGAT 23 583 864 Antisense
TCGATTCGCGACGTGTATTCGTGCT 639 603 995 Antisense
TGCTGGCCGCCACAAATATTCCATG 675 581 1016 Antisense
GAGCTCGATGAGGCACTCCGAAGAC 553 387 1042 Antisense
GAAAAGCGAATCTTCATTCCACTGC 73 355 1072 Antisense
GTTGTGTCTCTATGCAGAACTGCTG 325 437 1213 Antisense
TGCGAGGCGGGGAACTGACAGCTGC 326 583 1274 Antisense
GAAGCAGCTCTTCAAGCAGTTTCAC 617 341 1342 Antisense
GCAGTTTCACCAAGTGCTGGTCCAG 144 311 1357 Antisense
Sequence Source Affymetrix Proprietary Database