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[193815_at] beta-1,6-N-acetylglucosaminyltransferase

Description F22D6.11 /REP_DB=WormBase Gene ID /WP=CE05692 /GEN=gly-18 /TR=Q19730 /GB=CAA95817.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta-1,6-N-acetylglucosaminyltransferase
Cluster 6grp_total > 36      4grp_total > 46      6grp_cgc > 25      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 176.7
(3)
A 		79.6
(-0.7)
A 		20.4
(-3)
A 		38
(-2.3)
A 		156
B 203.3
(3)
M 		95.7
(-1.9)
A 		70.4
(-3)
A 		104.6
(-1.5)
A 		133
C 174.4
(3)
A 		81
(-2)
A 		66.4
(-2.8)
A 		62
(-3)
A 		112
avr 184.8
(3) 		85.4
(-1.5) 		52.4
(-3) 		68.2
(-2.3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 177.5
(3)
A 		176.9
(3)
A 		96.3
(-0.7)
A 		93.7
(-0.8)
A 		45.1
(-3)
A 		92.5
(-0.9)
A 		132
B 137.4
(1.5)
A 		152.7
(3)
A 		137.7
(1.6)
A 		123.8
(0.3)
A 		89.6
(-3)
A 		111.6
(-0.9)
A 		63
C 111.7
(0.1)
A 		193.5
(3)
A 		30.1
(-2.8)
A 		24
(-3)
A 		43.2
(-2.3)
A 		110.8
(0.1)
A 		170
avr 142.2
(1.3) 		174.4
(3) 		88
(-1.5) 		80.5
(-1.9) 		59.3
(-3) 		105
(-0.6) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 64.3
(3)
A 		17.3
(-1.8)
A 		5.3
(-3)
A 		5.6
(-3)
A 		59
B 64.8
(3)
M 		23.6
(-2.1)
A 		16.3
(-3)
A 		22.3
(-2.3)
A 		49
C 57.7
(3)
A 		23.3
(-1.4)
A 		23.2
(-1.4)
A 		10.4
(-3)
A 		47
avr 62.3
(3) 		21.4
(-2) 		14.9
(-2.7) 		12.8
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 32.7
(-0.7)
A 		62.9
(3)
A 		21
(-2.1)
A 		23.8
(-1.8)
A 		13.6
(-3)
A 		22.5
(-1.9)
A 		49
B 47.8
(2)
A 		50.8
(3)
A 		33.4
(-2.8)
A 		32.8
(-3)
A 		36.4
(-1.8)
A 		41.6
(-0.1)
A 		18
C 41.4
(1)
A 		59.1
(3)
A 		7.7
(-2.7)
A 		4.8
(-3)
A 		14
(-2)
A 		37.1
(0.6)
A 		54
avr 40.6
(0.3) 		57.6
(3) 		20.7
(-3) 		20.5
(-3) 		21.3
(-2.9) 		33.7
(-0.9) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193815_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2480
Sequence Type Exemplar sequence
Representative Public ID F22D6.11 NCBI
Target Description F22D6.11 /REP_DB=WormBase Gene ID /WP=CE05692 /GEN=gly-18 /TR=Q19730 /GB=CAA95817.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta-1,6-N-acetylglucosaminyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059613(11), AY037797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059613 NCBI Caenorhabditis elegans F22D6.11 (beta-1,6-N-acetylglucosaminyltransferase) mRNA, complete cds. 11/11 None
AY037797 NCBI Caenorhabditis elegans GLY-18 (gly-18) mRNA, gly-18(+) allele, partial cds. 11/11 None
SNAP00000037656 ENSEMBL cdna:SNAP chromosome:CEL140:I:7118372:7120419:1 11/11 None
GENEFINDER00000037665 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7118372:7120419:1 11/11 None
F22D6.11 ENSEMBL cdna:known chromosome:CEL140:I:7118372:7120419:1 gene:F22D6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7118302-7120350(+) 100.0 100.0
Public Domain and Genome References
Gene Title beta-1,6-N-acetylglucosaminyltransferase
Gene Symbol gly-18
Ensembl F22D6.11
Entrez Gene 172446 Entrez gene
SwissProt Q19730 EMBL-EBI
WormBase CE30759 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599777_AT similar to glucosaminyl (N-acetyl) transferase 3, mucin type cfa
CANINE:1595950_AT similar to glucosaminyl (N-acetyl) transferase 3, mucin type cfa
CANINE_2:CFA.7863.1.A1_AT similar to glucosaminyl (N-acetyl) transferase 3, mucin type cfa
CANINE_2:CFAAFFX.25482.1.S1_AT similar to glucosaminyl (N-acetyl) transferase 3, mucin type cfa
CHICKEN:GGA.8991.1.S1_AT similar to core 2 beta-1,6-N-acetylglucosaminyltransferase gga
HG-U133_PLUS_2:219508_AT glucosaminyl (N-acetyl) transferase 3, mucin type hs
HG-U133A:219508_AT glucosaminyl (N-acetyl) transferase 3, mucin type hs
HG-FOCUS:219508_AT glucosaminyl (N-acetyl) transferase 3, mucin type hs
HG-U133A_2:219508_AT glucosaminyl (N-acetyl) transferase 3, mucin type hs
U133_X3P:G4758421_3P_AT glucosaminyl (N-acetyl) transferase 3, mucin type hs
HG-U95E:77751_AT glucosaminyl (N-acetyl) transferase 3, mucin type hs
MOUSE430_2:1430963_AT glucosaminyl (N-acetyl) transferase 3, mucin type mm
MOE430B:1430963_AT glucosaminyl (N-acetyl) transferase 3, mucin type mm
MOUSE430A_2:1424901_AT glucosaminyl (N-acetyl) transferase 3, mucin type mm
MOUSE430_2:1424901_AT glucosaminyl (N-acetyl) transferase 3, mucin type mm
MOE430A:1424901_AT glucosaminyl (N-acetyl) transferase 3, mucin type mm
MG-U74CV2:132809_AT glucosaminyl (N-acetyl) transferase 3, mucin type mm
RG-U34A:RC_AI639436_AT glucosaminyl (N-acetyl) transferase 3, mucin type rn
RAE230A:1392209_AT glucosaminyl (N-acetyl) transferase 3, mucin type rn
RAT230_2:1392209_AT glucosaminyl (N-acetyl) transferase 3, mucin type rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95817 Hypothetical protein F22D6.11 [Caenorhabditis elegans] ref|NP_492014.4| F22D6.11 [Caenorhabditis elegans] 0.0
blast AAK94762 GLY-18 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.3E-85
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.3E-85
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 2.9E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492014.4 1 7-26
F22D6.11 1 7-26
SNAP00000037656 1 7-26
GENEFINDER00000037665 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:193815_AT
accatatcaatatcaacgccttcgaggtaaaaatgagactcagtctccactgccgctttt
taagtcatcactgtcatcactaataccaagagaagctgccaatcacttatcatcatcaag
cattcctcaacaactattggaatttcttcgaaatactggaattgctgatgaaggattttg
gggaactctttttggaaacaagaacttgtttgatattcctggatctttgaatttcaaaga
atggatatcatacaaaaataatgtagaaacgaacttaacatatcccactgatggatggag
atattatatatccagagatcaaatatggtcaaagcccaattgtcataattacatgaaagc
tgggtcatgtgtttttggaattggagatgtcccaagattattgaagtcaaaagcgttggt
tgctcataaattttacctaaaatcagagccagaagcatatttttgtttattaaaggaaca
ccgtcgccgaacgtgtaatcccgatttaacatttgatgcatcaaaatactcagagttacc
gcaagttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATATCAATATCAACGCCTTCGA 420 85 747 Antisense
AAATGAGACTCAGTCTCCACTGCCG 638 119 777 Antisense
TCCACTGCCGCTTTTTAAGTCATCA 456 589 792 Antisense
GTCATCACTGTCATCACTAATACCA 658 467 810 Antisense
GAGAAGCTGCCAATCACTTATCATC 49 393 836 Antisense
TTATCATCATCAAGCATTCCTCAAC 48 681 853 Antisense
GAACTTGTTTGATATTCCTGGATCT 520 349 948 Antisense
AACGAACTTAACATATCCCACTGAT 269 139 1014 Antisense
GAAAGCTGGGTCATGTGTTTTTGGA 92 359 1101 Antisense
GAACACCGTCGCCGAACGTGTAATC 673 347 1222 Antisense
AATACTCAGAGTTACCGCAAGTTGA 529 171 1271 Antisense
Sequence Source Affymetrix Proprietary Database