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[193813_at] REV protein (anti-repression transactivator protein)

Description T21C9.12 /REP_DB=WormBase Gene ID /WP=CE06481 /TR=Q22647 /GB=CAA97339.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=REV protein (anti-repression transactivator protein)
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 38      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 83      6grp_total > 37      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 755.9
(3)
P 		570.2
(-0.6)
P 		638.2
(0.7)
P 		449.8
(-3)
P 		306
B 758.4
(2.8)
P 		573.8
(-2.4)
P 		765.8
(3)
P 		553.3
(-3)
P 		213
C 831.2
(3)
P 		700.4
(0.3)
P 		579.4
(-2.1)
P 		536.8
(-3)
P 		294
avr 781.8
(3) 		614.8
(-0.7) 		661.1
(0.3) 		513.3
(-3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 536.1
(1.7)
P 		589.3
(3)
P 		349.4
(-3)
P 		389.1
(-2)
P 		428.7
(-1)
P 		565.3
(2.4)
P 		240
B 467.1
(0.7)
P 		524.8
(3)
P 		394.6
(-2.1)
P 		427.8
(-0.8)
P 		371.2
(-3)
P 		504.5
(2.2)
P 		154
C 788.3
(3)
P 		547.9
(-1.3)
P 		453
(-3)
P 		515
(-1.9)
P 		453
(-3)
P 		531.4
(-1.6)
P 		335
avr 597.2
(3) 		554
(1.7) 		399
(-3) 		444
(-1.6) 		417.6
(-2.4) 		533.7
(1.1) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 275.2
(3)
P 		123.8
(-1.3)
P 		166.8
(-0.1)
P 		65.8
(-3)
P 		209
B 241.8
(3)
P 		141.7
(-1.8)
P 		177.4
(-0.1)
P 		117.9
(-3)
P 		124
C 275.2
(3)
P 		201.4
(0.6)
P 		201.9
(0.6)
P 		90.5
(-3)
P 		185
avr 264.1
(3) 		155.6
(-0.8) 		182
(0.1) 		91.4
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 98.8
(-2)
P 		209.6
(3)
P 		76.1
(-3)
P 		98.7
(-2)
P 		129.4
(-0.6)
P 		137.6
(-0.2)
P 		134
B 162.5
(1.3)
P 		174.7
(2.1)
P 		95.8
(-3)
P 		113.3
(-1.9)
P 		150.8
(0.6)
P 		188.1
(3)
P 		92
C 292.2
(3)
P 		167.2
(-1)
P 		115.3
(-2.6)
P 		103.6
(-3)
P 		146.6
(-1.6)
P 		177.9
(-0.6)
P 		189
avr 184.5
(3) 		183.8
(3) 		95.7
(-3) 		105.2
(-2.4) 		142.3
(0.1) 		167.9
(1.9) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12514
Sequence Type Exemplar sequence
Representative Public ID T21C9.12 NCBI
Target Description T21C9.12 /REP_DB=WormBase Gene ID /WP=CE06481 /TR=Q22647 /GB=CAA97339.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=REV protein (anti-repression transactivator protein)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073321 NCBI Caenorhabditis elegans T21C9.12 (T21C9.12) mRNA, complete cds. 11/11 None
SNAP00000011992 ENSEMBL cdna:SNAP chromosome:CEL140:V:10601696:10604358:1 11/11 None
GENEFINDER00000012001 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10601696:10604358:1 11/11 None
T21C9.12 ENSEMBL cdna:known chromosome:CEL140:V:10601689:10604718:1 gene:T21C9.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10601695-10604358(+) 100.0 100.0
Public Domain and Genome References
Gene Title REV protein (anti-repression transactivator protein)
Ensembl T21C9.12
Entrez Gene 179481 Entrez gene
SwissProt Q22647 EMBL-EBI
WormBase CE06481 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260596_AT NLI interacting factor (NIF) family protein at
CANINE:1605651_AT similar to translocase of inner mitochondrial membrane 50 homolog cfa
CANINE_2:CFA.17929.1.S1_AT similar to translocase of inner mitochondrial membrane 50 homolog cfa
CANINE_2:CFA.17929.1.S1_S_AT similar to translocase of inner mitochondrial membrane 50 homolog cfa
DROSOPHILA_2:1627919_AT dm
DROSGENOME1:153536_AT dm
HG-U133_PLUS_2:217612_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U133A_2:217612_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U133A:217612_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBA:AA090842_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBA:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBB:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBC:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBD:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HUGENEFL:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HC-G110:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBB:RC_H65956_S_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
U133_X3P:HS.271717.0.A1_3P_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
U133_X3P:HS.233952.2.A1_3P_A_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U133_PLUS_2:224913_S_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U133B:224913_S_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U95B:45285_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
MOE430A:1455456_A_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MOUSE430A_2:1455456_A_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MOUSE430_2:1455456_A_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MG-U74BV2:108489_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MG-U74CV2:168614_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MOE430B:1441819_X_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MOUSE430_2:1441819_X_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MU19KSUBA:TC23122_AT RIKEN cDNA 2810403L02 gene, mRNA (cDNA clone MGC:47068 IMAGE:4948744) mm
Protein Similarities
Method ID Description E-Value
blast CAA97339 Hypothetical protein T21C9.12 [Caenorhabditis elegans] ref|NP_505722.1| T21C9.12 [Caenorhabditis elegans] 0.0
blast CAE64858 Hypothetical protein CBG09654 [Caenorhabditis briggsae] 0.0
blast XP_794459 PREDICTED: similar to translocase of inner mitochondrial membrane 50 homolog [Strongylocentrotus purpuratus] 8.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR004274 EMBL-EBI NLI interacting factor 1.1E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505722.1 1 168-190
T21C9.12 1 168-190
SNAP00000011992 1 168-190
GENEFINDER00000012001 1 168-190
Sequence
Target Sequence 
>C. ELEGANS:193813_AT
tttcctaaagcgtccagcacttgactatttcctcgatgtcattggatatccaaattttga
agtcgttatctattcatctgaatcaatgatgacagctgctccagttgttgatagttttga
tccaaaacaaagaattatgtacaagttgttcagagattgcacaaagtatatgaatggaca
ccatgtcaaagatttgtcgaaattgaatcgcgatttgtcgaaagttatttatatcgattt
tgacgctaaatcaggacaattaaatccagaaaacatgttaagagtaccagagtggaaagg
aaatatggatgatacaagtctagttgatttggcagagcttcttaaaactattcacctatc
tgacgctgaagatgttcgtcccatgctacagtactactcgcaatacgatgatccagcgaa
agaattccgtcgacgagctgtatacttgtcacaacaagaagaacaaaagaaacaacaacc
cgatgatagttccatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCTAAAGCGTCCAGCACTTGAC 41 669 822 Antisense
AGCACTTGACTATTTCCTCGATGTC 325 77 837 Antisense
AAGTCGTTATCTATTCATCTGAATC 26 159 881 Antisense
AATCAATGATGACAGCTGCTCCAGT 475 171 902 Antisense
GCAGAGCTTCTTAAAACTATTCACC 399 313 1153 Antisense
AAACTATTCACCTATCTGACGCTGA 20 129 1166 Antisense
GACGCTGAAGATGTTCGTCCCATGC 397 381 1183 Antisense
TCCCATGCTACAGTACTACTCGCAA 100 599 1200 Antisense
GATCCAGCGAAAGAATTCCGTCGAC 336 413 1231 Antisense
TTCCGTCGACGAGCTGTATACTTGT 166 691 1246 Antisense
ACAACAACCCGATGATAGTTCCATG 325 111 1293 Antisense
Sequence Source Affymetrix Proprietary Database