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[193812_at]

Description K01G12.1 /REP_DB=WormBase Gene ID /WP=CE16200 /CHR=4 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase) (HINXTON) TR:O45631 protein_id:CAB05235.1
Cluster 4grp_high_8_8 > 19      6grp_total > 08      4grp_total > 28      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 59.8
(-0.4)
A 		95.7
(3)
A 		32
(-3)
P 		80.3
(1.5)
M 		64
B 62.5
(1)
A 		73.2
(3)
P 		63.7
(1.2)
A 		40.8
(-3)
A 		32
C 85.9
(0.2)
P 		51.3
(-2.6)
A 		46
(-3)
P 		121.9
(3)
P 		76
avr 69.4
(0.9) 		73.4
(1.7) 		47.2
(-3) 		81
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 58.8
(1.4)
A 		64.4
(3)
A 		56.9
(0.8)
A 		43.8
(-3)
A 		44
(-2.9)
A 		62.5
(2.4)
A 		21
B 68.4
(3)
A 		57.1
(1.8)
A 		54.3
(1.5)
P 		11
(-3)
A 		35.7
(-0.4)
A 		29.4
(-1.1)
A 		57
C 55.9
(-0.6)
P 		40.4
(-1.5)
A 		15.8
(-3)
A 		116.8
(3)
A 		53.5
(-0.8)
A 		47.2
(-1.1)
P 		101
avr 61
(3) 		54
(0.8) 		42.3
(-3) 		57.2
(1.8) 		44.4
(-2.3) 		46.4
(-1.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.8
(3)
A 		20.8
(2.6)
A 		8.4
(-3)
P 		11.7
(-1.5)
M 		13
B 19.9
(3)
A 		18.1
(2)
P 		14.8
(0.3)
A 		8.7
(-3)
A 		11
C 28.4
(3)
P 		14.8
(-3)
A 		16
(-2.5)
P 		20.5
(-0.5)
P 		14
avr 23.4
(3) 		17.9
(-0.2) 		13.1
(-3) 		13.6
(-2.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.8
(-3)
A 		22.9
(3)
A 		12.4
(-2.2)
A 		11.1
(-2.9)
A 		13.3
(-1.8)
A 		15.2
(-0.8)
A 		12
B 23.8
(3)
A 		19
(1.6)
A 		13.2
(-0)
P 		2.9
(-3)
A 		14.5
(0.3)
A 		10.9
(-0.7)
A 		21
C 20.7
(2.1)
P 		12.3
(-0.4)
A 		4
(-3)
A 		23.5
(3)
A 		17.3
(1.1)
A 		15.8
(0.6)
P 		20
avr 18.4
(3) 		18.1
(2.8) 		9.9
(-3) 		12.5
(-1.2) 		15
(0.6) 		14
(-0.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9404
Sequence Type Exemplar sequence
Representative Public ID K01G12.1 NCBI
Target Description K01G12.1 /REP_DB=WormBase Gene ID /WP=CE16200 /CHR=4 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase) (HINXTON) TR:O45631 protein_id:CAB05235.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) K01G12.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K01G12.1 K01G12.1 /REP_DB=WormBase Gene ID /WP=CE16200 /CHR=4 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase) (HINXTON) TR:O45631 protein_id:CAB05235.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:193812_AT
aacatttcggtctacaaacgctcttttttacttcaaactcttcaatatatacgtccgccc
aattcttgaattcggatgtgaagttttcaatcccaaactaaaatcactatccgaaaaatt
agaaaaacctcagcgatatttctcccgtcttgtatttaaaagatgcaaaatctcatatga
atcgtatgctgaccgcctgatacaagtaaaccaaacgactctgaaacatcatcggctcct
tcttattgctaaaacatatcatgatattgtcacgggtacacgtcacttccccgaatttac
aaaatacctcaaaaagtctaaaactccacgatttccgtatcaattgagtcccaatgggcc
gttcataaataacatattcctccataaatatctttccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTTCGGTCTACAAACGCTCTT 410 137 2208 Antisense
AACTCTTCAATATATACGTCCGCCC 191 141 2243 Antisense
CGTCCGCCCAATTCTTGAATTCGGA 561 243 2259 Antisense
GAAAAACCTCAGCGATATTTCTCCC 333 355 2329 Antisense
TATGAATCGTATGCTGACCGCCTGA 3 657 2383 Antisense
ACGACTCTGAAACATCATCGGCTCC 76 93 2422 Antisense
CATCGGCTCCTTCTTATTGCTAAAA 608 209 2437 Antisense
TATTGTCACGGGTACACGTCACTTC 21 667 2472 Antisense
AAAACTCCACGATTTCCGTATCAAT 426 131 2527 Antisense
ATTGAGTCCCAATGGGCCGTTCATA 402 5 2550 Antisense
ATTCCTCCATAAATATCTTTCCTTT 591 7 2583 Antisense
Sequence Source Affymetrix Proprietary Database