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[193811_at] beta-1,6-N-acetylglucosaminyltransferase

Description F22D6.12 /REP_DB=WormBase Gene ID /WP=CE05693 /GEN=gly-19 /TR=Q19729 /GB=CAA95816.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta-1,6-N-acetylglucosaminyltransferase
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 91      6grp_total > 65      4grp_total > 16      6grp_cgc > 66      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 663
1 2 3 4 range
A 176.9
(-3)
P 		363.2
(-1.3)
P 		296.3
(-1.9)
P 		821.7
(3)
P 		645
B 159.1
(-3)
P 		272.5
(-1.1)
P 		325.6
(-0.2)
P 		519.8
(3)
P 		361
C 174.3
(-3)
P 		299.3
(-1)
P 		391.7
(0.5)
P 		548
(3)
P 		374
avr 170.1
(-3) 		311.7
(-1.2) 		337.9
(-0.8) 		629.8
(3) 		460

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 187.1
(0)
P 		160.9
(-3)
P 		206.4
(2.3)
P 		203.4
(1.9)
P 		212.7
(3)
P 		182.1
(-0.5)
P 		52
B 154.8
(-3)
P 		211.1
(1.7)
P 		227.4
(3)
P 		179.1
(-1)
P 		189.7
(-0.1)
P 		197.5
(0.5)
P 		73
C 140.4
(-2.4)
P 		168
(-1)
P 		170.2
(-0.9)
P 		209.4
(1.1)
P 		127.4
(-3)
P 		248.7
(3)
P 		121
avr 160.8
(-3) 		180
(-0.6) 		201.3
(2) 		197.3
(1.5) 		176.6
(-1) 		209.4
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 64.4
(-3)
P 		78.8
(-1.5)
P 		77.5
(-1.6)
P 		120.3
(3)
P 		56
B 50.7
(-3)
P 		67.3
(-1.3)
P 		75.4
(-0.5)
P 		110.8
(3)
P 		60
C 57.7
(-3)
P 		86.1
(-0.8)
P 		136.5
(3)
P 		92.4
(-0.4)
P 		79
avr 57.6
(-3) 		77.4
(-0.6) 		96.5
(1.6) 		107.8
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 34.5
(-3)
P 		57.2
(1.6)
P 		45
(-0.9)
P 		51.6
(0.5)
P 		64.2
(3)
P 		44.3
(-1)
P 		30
B 53.9
(-1.7)
P 		70.3
(1.6)
P 		55.2
(-1.4)
P 		47.4
(-3)
P 		77.1
(3)
P 		73.6
(2.3)
P 		30
C 52
(-1.5)
P 		51.3
(-1.6)
P 		43.3
(-2.7)
P 		42.1
(-2.9)
P 		41.2
(-3)
P 		83.2
(3)
P 		42
avr 46.8
(-3) 		59.6
(0.8) 		47.8
(-2.7) 		47
(-2.9) 		60.8
(1.2) 		67
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193811_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.376
Sequence Type Exemplar sequence
Representative Public ID F22D6.12 NCBI
Target Description F22D6.12 /REP_DB=WormBase Gene ID /WP=CE05693 /GEN=gly-19 /TR=Q19729 /GB=CAA95816.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta-1,6-N-acetylglucosaminyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059614 NCBI Caenorhabditis elegans F22D6.12 (beta-1,6-N-acetylglucosaminyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000037662 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7121149:7122794:1 9/11 None
F22D6.12.2 ENSEMBL cdna:known chromosome:CEL140:I:7121050:7123156:1 gene:F22D6.12 11/11 None
F22D6.12.1 ENSEMBL cdna:known chromosome:CEL140:I:7121149:7123116:1 gene:F22D6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7121079-7122913(+) 100.0 100.0
Public Domain and Genome References
Gene Title beta-1,6-N-acetylglucosaminyltransferase
Gene Symbol gly-19
Ensembl F22D6.12
Entrez Gene 172447 Entrez gene
SwissProt Q19729 EMBL-EBI
WormBase CE29590 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95816 Hypothetical protein F22D6.12 [Caenorhabditis elegans] ref|NP_492015.1| F22D6.12 [Caenorhabditis elegans] gb|AAK94766.1| GLY-19 [Caenorhabditis elegans] 0.0
blast AAK94764 GLY-19 [Caenorhabditis elegans] 0.0
blast CAA95817 Hypothetical protein F22D6.11 [Caenorhabditis elegans] ref|NP_492014.4| F22D6.11 [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.2E-90
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492015.1 1 9-28
F22D6.12.2 1 9-28
F22D6.12.1 1 9-28
GENEFINDER00000037662 1 9-28
Sequence
Target Sequence 
>C. ELEGANS:193811_AT
tatcaacaagcacgactcaccggaaagaatgaaaatgaatctccacttccacttttcaaa
tcctcactatctgcaatcattccaagaaaagctgccaatcagctggcatcctccaataca
gctcgaaagcttttagaatttctttggaatactgaaattgcagacgaaggattttggggt
actttatttggaaataaggaccaatttaatatttctggatcaataaactcaaaagattgg
atggaatatagagataatcaaaataatatttttaatccaacagatggatggagttattac
atatcaagagatcaaatttgggatccagaactttgtaaaaattacatgaaggatgattca
tgtgtttttggaattggagatgtcccaagattacggacgtcaaaggcattggttgctcat
aaattttacctgaaatcagagccggaagcctatttctgcttattgaaggaacatcatcgt
cgaacaataaatcccgatttaacattcgatgcatcaaaatactcagaactacctcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAACAAGCACGACTCACCGGAA 1 661 781 Antisense
GAATGAAAATGAATCTCCACTTCCA 336 331 807 Antisense
CCACTTTTCAAATCCTCACTATCTG 189 275 829 Antisense
TCCTCACTATCTGCAATCATTCCAA 394 593 841 Antisense
AAGCTGCCAATCAGCTGGCATCCTC 224 151 869 Antisense
CATCCTCCAATACAGCTCGAAAGCT 16 211 887 Antisense
TGCAGACGAAGGATTTTGGGGTACT 66 559 939 Antisense
GGACGTCAAAGGCATTGGTTGCTCA 676 523 1175 Antisense
GAGCCGGAAGCCTATTTCTGCTTAT 686 385 1219 Antisense
CATCATCGTCGAACAATAAATCCCG 309 211 1252 Antisense
TCAAAATACTCAGAACTACCTCAAG 344 629 1294 Antisense
Sequence Source Affymetrix Proprietary Database