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[193809_at] Human GC-rich sequence DNA-binding factor (GCF) like

Description F43G9.12 /REP_DB=WormBase Gene ID /WP=CE17822 /TR=O01989 /GB=CAB10727.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human GC-rich sequence DNA-binding factor (GCF) like
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 56      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 83      6grp_total > 47      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 440.4
(3)
P 		299.8
(-1.9)
P 		268.5
(-3)
P 		274.5
(-2.8)
P 		172
B 445.5
(3)
P 		210.2
(-3)
P 		283.8
(-1.1)
P 		232.6
(-2.4)
P 		235
C 411.6
(3)
P 		262.9
(-1.3)
P 		311.6
(0.1)
P 		202.4
(-3)
P 		209
avr 432.5
(3) 		257.6
(-2.4) 		288
(-1.4) 		236.5
(-3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 303
1 2 3 4 5 6 range
A 583.1
(3)
P 		462.6
(-0.3)
P 		366.1
(-3)
P 		405.5
(-1.9)
P 		410.6
(-1.8)
P 		502.6
(0.8)
P 		217
B 552.4
(3)
P 		355.3
(-3)
P 		508.1
(1.7)
P 		523.9
(2.1)
P 		401.7
(-1.6)
P 		548.1
(2.9)
P 		197
C 430.2
(0.3)
P 		486.5
(1.6)
P 		445.7
(0.7)
P 		440
(0.5)
P 		279.8
(-3)
P 		550.6
(3)
P 		271
avr 521.9
(2.6) 		434.8
(-0.5) 		440
(-0.3) 		456.5
(0.3) 		364
(-3) 		533.8
(3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 160.4
(3)
P 		65.1
(-1.8)
P 		70.2
(-1.5)
P 		40.2
(-3)
P 		120
B 142.1
(3)
P 		51.9
(-2.9)
P 		65.8
(-1.9)
P 		49.6
(-3)
P 		93
C 136.3
(3)
P 		75.6
(-0.6)
P 		108.6
(1.4)
P 		34.1
(-3)
P 		102
avr 146.3
(3) 		64.2
(-1.7) 		81.5
(-0.7) 		41.3
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 107.5
(-1)
P 		164.5
(3)
P 		79.7
(-3)
P 		102.8
(-1.4)
P 		123.9
(0.1)
P 		122.4
(0)
P 		85
B 192.2
(2.1)
P 		118.3
(-3)
P 		123.4
(-2.6)
P 		138.8
(-1.6)
P 		163.2
(0.1)
P 		204.4
(3)
P 		86
C 159.4
(1.4)
P 		148.4
(0.8)
P 		113.4
(-1.4)
P 		88.5
(-3)
P 		90.5
(-2.9)
P 		184.3
(3)
P 		96
avr 153
(1.4) 		143.7
(0.5) 		105.5
(-3) 		110
(-2.6) 		125.9
(-1.1) 		170.4
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1160
Sequence Type Exemplar sequence
Representative Public ID F43G9.12 NCBI
Target Description F43G9.12 /REP_DB=WormBase Gene ID /WP=CE17822 /TR=O01989 /GB=CAB10727.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human GC-rich sequence DNA-binding factor (GCF) like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059940 NCBI Caenorhabditis elegans F43G9.12 (F43G9.12) mRNA, complete cds. 11/11 None
SNAP00000042153 ENSEMBL cdna:SNAP chromosome:CEL140:I:8651427:8652347:1 11/11 None
GENEFINDER00000042155 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8651453:8652347:1 10/11 None
F43G9.12 ENSEMBL cdna:known chromosome:CEL140:I:8648652:8652524:1 gene:F43G9.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8648582-8652278(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human GC-rich sequence DNA-binding factor (GCF) like
Ensembl F43G9.12
Entrez Gene 172662 Entrez gene
SwissProt O01989 EMBL-EBI
WormBase CE17822 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250525_AT expressed protein at
CANINE_2:CFAAFFX.313.1.S1_AT similar to GC-rich sequence DNA-binding factor homolog cfa
DROSOPHILA_2:1627693_AT dm
DROSGENOME1:151951_AT dm
CHICKEN:GGA.13720.1.S1_S_AT GC-rich sequence DNA-binding factor candidate gga
CHICKEN:GGA.14840.1.S1_S_AT GC-rich sequence DNA-binding factor candidate gga
CHICKEN:GGA.1672.1.S1_AT GC-rich sequence DNA-binding factor candidate gga
CHICKEN:GGAAFFX.24812.1.S1_S_AT GC-rich sequence DNA-binding factor candidate gga
HG-U133_PLUS_2:221158_AT chromosome 21 open reading frame 66 hs
HG-U133A:221158_AT chromosome 21 open reading frame 66 hs
HG-FOCUS:221158_AT chromosome 21 open reading frame 66 hs
HG-U133A_2:221158_AT chromosome 21 open reading frame 66 hs
HU35KSUBA:AA504744_AT chromosome 21 open reading frame 66 hs
U133_X3P:G7019390_3P_AT chromosome 21 open reading frame 66 hs
U133_X3P:HS2.283771.3.A1_3P_AT chromosome 21 open reading frame 66 hs
HG-U133_PLUS_2:1555125_AT chromosome 21 open reading frame 66 hs
HG-U95E:76228_AT chromosome 21 open reading frame 66 hs
HU35KSUBA:RC_AA504648_AT Chromosome 21 open reading frame 66 hs
HU35KSUBD:RC_AA421138_AT Chromosome 21 open reading frame 66 hs
HU35KSUBD:RC_AA449779_F_AT Chromosome 21 open reading frame 66 hs
HG-U133A:218515_AT Chromosome 21 open reading frame 66 hs
HG-U133_PLUS_2:218515_AT Chromosome 21 open reading frame 66 hs
HG-U133A_2:218515_AT Chromosome 21 open reading frame 66 hs
U133_X3P:G7706175_3P_AT Chromosome 21 open reading frame 66 hs
U133_X3P:HS2.143835.1.A1_3P_S_AT Chromosome 21 open reading frame 66 hs
U133_X3P:HS.145406.0.A1_3P_AT Chromosome 21 open reading frame 66 hs
HG-U133_PLUS_2:1556789_A_AT Chromosome 21 open reading frame 66 hs
HG-U133_PLUS_2:239407_AT Chromosome 21 open reading frame 66 hs
HG-U133B:239407_AT Chromosome 21 open reading frame 66 hs
HG-U95B:44109_AT Chromosome 21 open reading frame 66 hs
HG-U95C:65243_AT Chromosome 21 open reading frame 66 hs
HG-U95E:82749_AT Chromosome 21 open reading frame 66 hs
HG-U133_PLUS_2:240105_AT Chromosome 21 open reading frame 66 hs
HG-U133B:240105_AT Chromosome 21 open reading frame 66 hs
HG-U133_PLUS_2:243422_AT Chromosome 21 open reading frame 66 hs
HG-U133B:243422_AT Chromosome 21 open reading frame 66 hs
HG-U95C:59536_AT Chromosome 21 open reading frame 66 hs
HG-U95E:80904_AT Chromosome 21 open reading frame 66 hs
HU35KSUBD:RC_AA404995_AT Chromosome 21 open reading frame 66 hs
U133_X3P:HS.110114.0.S1_3P_AT Chromosome 21 open reading frame 66 hs
U133_X3P:HS.281975.0.A1_3P_AT Chromosome 21 open reading frame 66 hs
MG-U74AV2:92233_AT RIKEN cDNA 1810007M14 gene mm
MOE430A:1418007_AT RIKEN cDNA 1810007M14 gene mm
MOUSE430A_2:1418007_AT RIKEN cDNA 1810007M14 gene mm
MOUSE430_2:1418007_AT RIKEN cDNA 1810007M14 gene mm
MOE430A:1418008_AT RIKEN cDNA 1810007M14 gene mm
MOUSE430A_2:1418008_AT RIKEN cDNA 1810007M14 gene mm
MOUSE430_2:1418008_AT RIKEN cDNA 1810007M14 gene mm
MOE430A:1418009_AT RIKEN cDNA 1810007M14 gene mm
MOUSE430A_2:1418009_AT RIKEN cDNA 1810007M14 gene mm
MOUSE430_2:1418009_AT RIKEN cDNA 1810007M14 gene mm
MU19KSUBB:TC29639_AT RIKEN cDNA 1810007M14 gene, mRNA (cDNA clone MGC:35673 IMAGE:4947371) mm
MU19KSUBB:TC29639_G_AT RIKEN cDNA 1810007M14 gene, mRNA (cDNA clone MGC:35673 IMAGE:4947371) mm
Protein Similarities
Method ID Description E-Value
blast CAB02114 Hypothetical protein F43G9.12 [Caenorhabditis elegans] emb|CAB10727.1| Hypothetical protein F43G9.12 [Caenorhabditis elegans] ref|NP_492341.1| F43G9.12 [Caenorhabditis elegans] 0.0
blast CAE67085 Hypothetical protein CBG12496 [Caenorhabditis briggsae] 0.0
blast CAB02114 Hypothetical protein F43G9.12 [Caenorhabditis elegans] emb|CAB10727.1| Hypothetical protein F43G9.12 [Caenorhabditis elegans] ref|NP_492341.1| F43G9.12 [Caenorhabditis elegans] 1.0E-102
blast CAB02114 Hypothetical protein F43G9.12 [Caenorhabditis elegans] emb|CAB10727.1| Hypothetical protein F43G9.12 [Caenorhabditis elegans] ref|NP_492341.1| F43G9.12 [Caenorhabditis elegans] 8.0E-97
blast CAE67085 Hypothetical protein CBG12496 [Caenorhabditis briggsae] 3.0E-81
blast CAE67085 Hypothetical protein CBG12496 [Caenorhabditis briggsae] 1.0E-75
blast XP_395423 PREDICTED: similar to GA15158-PA [Apis mellifera] 4.0E-49
Sequence
Target Sequence 
>C. ELEGANS:193809_AT
gaatgggatccaatgtctcttcgacaaactcgtcatctcacaacattttgttcacttttt
gaaaaactgccaaatttgacggaaaaaagcaagcaattcaacgcatttctaaatgcaatt
cgagaacgaatttgtgattgtatttctgaagatctttttatgccaattttcatgccaaat
gctcttgaacaacctatttgtcgacaatttcacgatcgacaattttggacttgtattaag
ctcataaaatcgataaatgccctctcaccactgatatcaattgccgccagatttgaattg
gttgttgaaaaatgtgtcaactctcaatgtgttatggctcttcgtactggttcgaaaaac
gacgtgactgctgaacgaaaggttcggggattgctcgccgagcttgatgattcgcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGGATCCAATGTCTCTTCGAC 348 333 1924 Antisense
TGTCTCTTCGACAAACTCGTCATCT 54 559 1937 Antisense
AAACTCGTCATCTCACAACATTTTG 262 125 1949 Antisense
AAGCAAGCAATTCAACGCATTTCTA 88 147 2010 Antisense
GCCAATTTTCATGCCAAATGCTCTT 465 277 2085 Antisense
TAAAATCGATAAATGCCCTCTCACC 16 641 2168 Antisense
TCACCACTGATATCAATTGCCGCCA 61 625 2188 Antisense
ACTCTCAATGTGTTATGGCTCTTCG 158 101 2243 Antisense
ATGGCTCTTCGTACTGGTTCGAAAA 344 53 2257 Antisense
AAAGGTTCGGGGATTGCTCGCCGAG 485 119 2301 Antisense
CTCGCCGAGCTTGATGATTCGCTTT 452 233 2317 Antisense
Sequence Source Affymetrix Proprietary Database