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[193808_s_at]

Description Y57G11C.24A /REP_DB=WormBase Gene ID /WP=CE14972 /TR=O18250 /GB=CAB16527.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=epidermal growth factor receptor kinase substrate
Cluster 6grp_total > 10      4grp_total > 20      6grp_cgc > 64      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 40.3
(3)
A 		26.4
(0.6)
A 		5.8
(-3)
A 		37.2
(2.5)
A 		35
B 38.1
(0.5)
A 		47.3
(1.6)
A 		8.8
(-3)
A 		58.9
(3)
A 		50
C 12.5
(-2.5)
A 		6.6
(-3)
A 		17.2
(-2.2)
A 		85.1
(3)
A 		79
avr 30.3
(-0.6) 		26.8
(-1) 		10.6
(-3) 		60.4
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 31.5
(-0.3)
A 		21.6
(-1.3)
A 		42.1
(0.7)
A 		4.3
(-3)
A 		65.4
(3)
A 		5.2
(-2.9)
A 		61
B 8.3
(-2.8)
A 		65.4
(3)
A 		12.2
(-2.4)
A 		45
(0.9)
A 		39.4
(0.3)
A 		6.7
(-3)
A 		59
C 5.7
(-3)
A 		38.3
(0.6)
A 		59.7
(3)
A 		10.4
(-2.5)
A 		6.6
(-2.9)
A 		35.8
(0.3)
A 		54
avr 15.2
(-3) 		41.8
(3) 		38
(2.1) 		19.9
(-1.9) 		37.1
(1.9) 		15.9
(-2.8) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.7
(3)
A 		5.7
(-1.1)
A 		1.5
(-3)
A 		5.5
(-1.2)
A 		13
B 12.2
(2.8)
A 		11.7
(2.5)
A 		2
(-3)
A 		12.5
(3)
A 		11
C 4.2
(-1.9)
A 		1.9
(-3)
A 		6
(-1)
A 		14.4
(3)
A 		13
avr 10.4
(2.7) 		6.4
(-0.5) 		3.2
(-3) 		10.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 5.8
(-1.5)
A 		7.7
(-0.9)
A 		9.2
(-0.4)
A 		1.1
(-3)
A 		19.7
(3)
A 		1.3
(-2.9)
A 		19
B 2.9
(-2.9)
A 		21.8
(3)
A 		3
(-2.8)
A 		11.9
(-0.1)
A 		16
(1.2)
A 		2.5
(-3)
A 		19
C 2.1
(-3)
A 		11.7
(1.4)
A 		15.2
(3)
A 		2.1
(-3)
A 		2.1
(-3)
A 		12
(1.5)
A 		13
avr 3.6
(-3) 		13.7
(3) 		9.1
(0.3) 		5
(-2.2) 		12.6
(2.3) 		5.3
(-2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193808_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9689
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.24A NCBI
Target Description Y57G11C.24A /REP_DB=WormBase Gene ID /WP=CE14972 /TR=O18250 /GB=CAB16527.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=epidermal growth factor receptor kinase substrate
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070402(11), NM_070401(11), NM_001028350(11), NM_001028351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070402 NCBI Caenorhabditis elegans EPS (human endocytosis) related family member (eps-8) (eps-8) mRNA, complete cds. 11/11 A 
NM_070401 NCBI Caenorhabditis elegans EPS (human endocytosis) related family member (eps-8) (eps-8) mRNA, complete cds. 11/11 A 
NM_001028350 NCBI Caenorhabditis elegans EPS (human endocytosis) related family member (eps-8) (eps-8) mRNA, complete cds. 11/11 None
NM_001028351 NCBI Caenorhabditis elegans EPS (human endocytosis) related family member (eps-8) (eps-8) mRNA, complete cds. 11/11 None
Y57G11C.24a ENSEMBL cdna:known chromosome:CEL140:IV:14879452:14896646:1 gene:Y57G11C.24 11/11 None
Y57G11C.24c ENSEMBL cdna:known chromosome:CEL140:IV:14879528:14900613:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.3 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.10 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.6 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.9 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.4 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.7 ENSEMBL cdna:known chromosome:CEL140:IV:14879529:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.2 ENSEMBL cdna:known chromosome:CEL140:IV:14879541:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.8 ENSEMBL cdna:known chromosome:CEL140:IV:14885532:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.11 ENSEMBL cdna:known chromosome:CEL140:IV:14885535:14900355:1 gene:Y57G11C.24 11/11 None
Y57G11C.24d.5 ENSEMBL cdna:known chromosome:CEL140:IV:14885540:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24d.1 ENSEMBL cdna:known chromosome:CEL140:IV:14886576:14900355:1 gene:Y57G11C.24 11/11 A 
Y57G11C.24e.1 ENSEMBL cdna:known chromosome:CEL140:IV:14891425:14900355:1 gene:Y57G11C.24 11/11 None
Y57G11C.24e.2 ENSEMBL cdna:known chromosome:CEL140:IV:14891426:14900355:1 gene:Y57G11C.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178411 5 4 NM_001028350 193765_at (11), 193808_s_at (11)
NM_001028351 193765_at (11), 193808_s_at (11)
NM_070401 193765_at (11), 193808_s_at (11)
NM_070402 193808_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14879533-14896168(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G11C.24
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16527 Hypothetical protein Y57G11C.24a [Caenorhabditis elegans] ref|NP_502803.2| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
blast CAB16526 Hypothetical protein Y57G11C.24c [Caenorhabditis elegans] ref|NP_502802.2| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
blast CAE45095 Hypothetical protein Y57G11C.24d [Caenorhabditis elegans] ref|NP_001023521.1| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
blast CAE45094 Hypothetical protein Y57G11C.24e [Caenorhabditis elegans] ref|NP_001023522.1| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 4.1E-6
Pfam IPR001452 EMBL-EBI SH3 4.1E-6
Pfam IPR001452 EMBL-EBI SH3 4.1E-6
Sequence
Target Sequence 
>C. ELEGANS:193808_S_AT
tgagctcccaacacaatgtaatccaaattaatgacggtgttggaaaaatggaagttttta
ttagtaaaacttgtaatttcattttgatcaccacttgtaatctgttttgctccacaacta
aaaccgcagtgcccgacatctaccgggcttttgtaatgaatgacgaaacccggcaaatgt
cgggcacaccatgtgagaacagtcgttcctttttaagctcaaatactttgtcctcctctc
cagaaaatgctccagaaattccattacttgaaaatttgaaattcaatcataacaaacttt
atctgtttcacatactctcacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCTCCCAACACAATGTAATCCA 227 565 1754 Antisense
ATTTCATTTTGATCACCACTTGTAA 8 17 1829 Antisense
GTAATCTGTTTTGCTCCACAACTAA 211 463 1850 Antisense
CACAACTAAAACCGCAGTGCCCGAC 448 193 1866 Antisense
CGACATCTACCGGGCTTTTGTAATG 500 249 1887 Antisense
GAATGACGAAACCCGGCAAATGTCG 636 301 1911 Antisense
GCAAATGTCGGGCACACCATGTGAG 509 317 1926 Antisense
GAACAGTCGTTCCTTTTTAAGCTCA 170 349 1950 Antisense
TAAGCTCAAATACTTTGTCCTCCTC 23 639 1967 Antisense
ATGCTCCAGAAATTCCATTACTTGA 671 41 2000 Antisense
TTATCTGTTTCACATACTCTCACCA 181 681 2052 Antisense
Sequence Source Affymetrix Proprietary Database