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[193806_s_at] signal recognition particle receptor beta subunit like

Description R186.3 /REP_DB=WormBase Gene ID /WP=CE12874 /TR=Q22013 /GB=CAB01443.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=signal recognition particle receptor beta subunit like
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 49      4grp_highest_8_8 > 10      4grp_high_8_8 > 62      6grp_highest_nonorm > 75      6grp_total > 90      4grp_total > 57      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 562
1 2 3 4 range
A 683.6
(-1.7)
P 		924.8
(2)
P 		992.3
(3)
P 		594.5
(-3)
P 		398
B 649.1
(-1.7)
P 		939.5
(1.5)
P 		1074.9
(3)
P 		534.5
(-3)
P 		540
C 756.5
(-1)
P 		941.8
(1.2)
P 		1096.6
(3)
P 		584.5
(-3)
P 		512
avr 696.4
(-1.4) 		935.4
(1.5) 		1054.6
(3) 		571.2
(-3) 		483

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 1102.2
(3)
P 		751.1
(-3)
P 		867.9
(-1)
P 		874.9
(-0.9)
P 		934.9
(0.1)
P 		913.9
(-0.2)
P 		351
B 854
(0.4)
P 		789.1
(-3)
P 		896.4
(2.6)
P 		904.6
(3)
P 		833.6
(-0.7)
P 		866.1
(1)
P 		116
C 775.1
(-1.4)
P 		861.1
(0.2)
P 		691.3
(-3)
P 		1005.3
(3)
P 		797
(-1)
P 		945.5
(1.9)
P 		314
avr 910.4
(2.2) 		800.4
(-3) 		818.5
(-2.2) 		928.3
(3) 		855.2
(-0.4) 		908.5
(2.1) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 248.9
(2.6)
P 		200.8
(1)
P 		259.4
(3)
P 		87
(-3)
P 		172
B 207
(1.1)
P 		232
(2.2)
P 		249.1
(3)
P 		113.9
(-3)
P 		135
C 250.4
(0.2)
P 		270.8
(0.6)
P 		382.2
(3)
P 		98.6
(-3)
P 		284
avr 235.4
(1.1) 		234.5
(1.1) 		296.9
(3) 		99.8
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 203.2
(-2.1)
P 		267.1
(2)
P 		189
(-3)
P 		221.9
(-0.9)
P 		282.1
(3)
P 		222.5
(-0.8)
P 		93
B 297.1
(0.9)
P 		262.7
(-0.8)
P 		217.7
(-3)
P 		239.6
(-1.9)
P 		338.7
(3)
P 		323
(2.2)
P 		121
C 287.3
(1.8)
P 		262.7
(0.7)
P 		176
(-3)
P 		202.2
(-1.9)
P 		257.9
(0.5)
P 		316.5
(3)
P 		141
avr 262.5
(1.2) 		264.2
(1.3) 		194.2
(-3) 		221.2
(-1.4) 		292.9
(3) 		287.3
(2.7) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193806_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13848
Sequence Type Exemplar sequence
Representative Public ID R186.3 NCBI
Target Description R186.3 /REP_DB=WormBase Gene ID /WP=CE12874 /TR=Q22013 /GB=CAB01443.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=signal recognition particle receptor beta subunit like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073844 NCBI Caenorhabditis elegans R186.3 (R186.3) mRNA, complete cds. 11/11 None
SNAP00000011788 ENSEMBL cdna:SNAP chromosome:CEL140:V:12968909:12969798:-1 9/11 None
GENEFINDER00000011794 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12968785:12969798:-1 11/11 None
R186.3 ENSEMBL cdna:known chromosome:CEL140:V:12968617:12969800:-1 gene:R186.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12968784-12969798(-) 100.0 100.0
Public Domain and Genome References
Gene Title signal recognition particle receptor beta subunit like
Ensembl R186.3
Entrez Gene 179781 Entrez gene
SwissProt Q22013 EMBL-EBI
WormBase CE12874 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13988_AT expressed protein at
ATH1-121501:266073_AT expressed protein at
CANINE:1601023_AT similar to Signal recognition particle receptor beta subunit (SR-beta) (Protein APMCF1) cfa
CANINE_2:CFAAFFX.10862.1.S1_AT similar to Signal recognition particle receptor beta subunit (SR-beta) (Protein APMCF1) cfa
DROSOPHILA_2:1630713_AT Signal recognition particle receptor dm
DROSGENOME1:144216_AT Signal recognition particle receptor dm
HG-U133_PLUS_2:218140_X_AT signal recognition particle receptor, B subunit hs
HG-U133A:218140_X_AT signal recognition particle receptor, B subunit hs
HG-FOCUS:218140_X_AT signal recognition particle receptor, B subunit hs
HG-U133A_2:218140_X_AT signal recognition particle receptor, B subunit hs
HU35KSUBA:RC_AA476582_AT signal recognition particle receptor, B subunit hs
HU35KSUBA:RC_AA608565_AT signal recognition particle receptor, B subunit hs
U133_X3P:G10864014_3P_A_AT signal recognition particle receptor, B subunit hs
U133_X3P:HS.12152.0.S1_3P_AT signal recognition particle receptor, B subunit hs
HG-U133_PLUS_2:222532_AT signal recognition particle receptor, B subunit hs
HG-U133B:222532_AT signal recognition particle receptor, B subunit hs
HG-U95B:56529_AT signal recognition particle receptor, B subunit hs
U133_X3P:HS.12152.1.S1_3P_AT Signal recognition particle receptor, B subunit hs
HG-U133_PLUS_2:227737_AT Signal recognition particle receptor, B subunit hs
HG-U133B:227737_AT Signal recognition particle receptor, B subunit hs
HG-U95E:76809_AT Signal recognition particle receptor, B subunit hs
MU11KSUBB:MSA.1577.0_S_AT signal recognition particle receptor, B subunit mm
MU11KSUBB:MSA.8463.0_S_AT signal recognition particle receptor, B subunit mm
MG-U74AV2:101114_AT signal recognition particle receptor, B subunit mm
MG-U74BV2:114768_AT signal recognition particle receptor, B subunit mm
MOE430A:1421012_AT signal recognition particle receptor, B subunit mm
MOUSE430A_2:1421012_AT signal recognition particle receptor, B subunit mm
MOUSE430_2:1421012_AT signal recognition particle receptor, B subunit mm
MOE430A:1425348_A_AT signal recognition particle receptor, B subunit mm
MOUSE430A_2:1425348_A_AT signal recognition particle receptor, B subunit mm
MOUSE430_2:1425348_A_AT signal recognition particle receptor, B subunit mm
MOE430A:1450089_A_AT signal recognition particle receptor, B subunit mm
MOUSE430A_2:1450089_A_AT signal recognition particle receptor, B subunit mm
MOUSE430_2:1450089_A_AT signal recognition particle receptor, B subunit mm
MU19KSUBA:TC25520_AT Signal recognition particle receptor, B subunit, mRNA (cDNA clone MGC:6065 IMAGE:3490766) mm
MU19KSUBB:TC33766_AT Signal recognition particle receptor, B subunit, mRNA (cDNA clone MGC:6065 IMAGE:3490766) mm
MU19KSUBC:TC37624_S_AT Signal recognition particle receptor, B subunit, mRNA (cDNA clone MGC:6065 IMAGE:3490766) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01443 Hypothetical protein R186.3 [Caenorhabditis elegans] ref|NP_506245.1| R186.3 [Caenorhabditis elegans] 1.0E-117
blast CAB01443 Hypothetical protein R186.3 [Caenorhabditis elegans] ref|NP_506245.1| R186.3 [Caenorhabditis elegans] 1.0E-102
blast CAE64706 Hypothetical protein CBG09492 [Caenorhabditis briggsae] 1.0E-101
blast CAE64706 Hypothetical protein CBG09492 [Caenorhabditis briggsae] 4.0E-89
blast EAA11816 ENSANGP00000020947 [Anopheles gambiae str. PEST] ref|XP_316726.2| ENSANGP00000020947 [Anopheles gambiae str. PEST] 2.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506245.1 1 10-30
R186.3 1 10-30
SNAP00000011788 1 10-30
GENEFINDER00000011794 1 10-30
Sequence
Target Sequence 
>C. ELEGANS:193806_S_AT
ttttcacccagctctcacagaaagaagccgaatatccaactaccacaaaaacgtacacat
cgatggtggagaataaaatcactttaagaatcaaagataaggagaaggagattatcgact
acccaggaaacgacagactgcgccagaagctcatcgagaaccatcttcatagccgttcac
ttctccggatcgtgtttgtcgttgactcggccgccttctcaaaaaatgctcgtgacgttg
ccgagcttttctacaccgtagctcttgaaaatgtcgataaggttccaatcctgattgcat
gccataagcaagacttatctctggcaaaaactgaaaaagttattcgaaacagcttggaaa
aagaaatcggactcattaacaaatcacgtgcagctgcgcttattggaactgatggatcag
aagagaagagatcaactttgactgatactggaatcgatttcaaatgggaggatcttaaaa
agcaagaagtctcgttcgtctcaacttcatctaacagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCACCCAGCTCTCACAGAAAGA 138 677 173 Antisense
GGAGATTATCGACTACCCAGGAAAC 611 515 279 Antisense
AAACGACAGACTGCGCCAGAAGCTC 56 125 300 Antisense
TTCTCCGGATCGTGTTTGTCGTTGA 481 683 353 Antisense
TCGGCCGCCTTCTCAAAAAATGCTC 504 605 379 Antisense
CTCGTGACGTTGCCGAGCTTTTCTA 672 227 401 Antisense
GCTTTTCTACACCGTAGCTCTTGAA 603 303 417 Antisense
GGTTCCAATCCTGATTGCATGCCAT 311 507 453 Antisense
ATCACGTGCAGCTGCGCTTATTGGA 32 29 555 Antisense
AAGAAGTCTCGTTCGTCTCAACTTC 563 151 656 Antisense
TTCGTCTCAACTTCATCTAACAGCG 689 693 667 Antisense
Sequence Source Affymetrix Proprietary Database