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[193804_at] Lectin C-type domain short and long forms (2 domains)

Description C25G4.1 /REP_DB=WormBase Gene ID /WP=CE05302 /TR=Q18175 /GB=CAA94587.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_total > 95      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 3.1
(-3)
A 		6.1
(-2.6)
A 		3
(-3)
A 		50.7
(3)
A 		48
B 6.5
(-3)
A 		25.8
(-0.3)
A 		7.2
(-2.9)
A 		50
(3)
A 		44
C 2.5
(-3)
A 		12.2
(-2.1)
A 		3.5
(-2.9)
A 		64.1
(3)
A 		62
avr 4
(-3) 		14.7
(-1.7) 		4.6
(-2.9) 		54.9
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 15.5
(-1.8)
A 		2.5
(-3)
A 		6.5
(-2.6)
A 		54.2
(1.7)
A 		53.7
(1.6)
A 		69.1
(3)
A 		67
B 5
(-2.8)
A 		2.5
(-3)
A 		4.2
(-2.9)
A 		35.2
(-0.8)
A 		53.6
(0.4)
P 		92.9
(3)
P 		90
C 2
(-3)
A 		2.4
(-3)
A 		3.8
(-2.9)
A 		68.8
(1.8)
A 		85.8
(3)
A 		63.1
(1.4)
A 		84
avr 7.5
(-2.6) 		2.5
(-3) 		4.8
(-2.8) 		52.7
(1.2) 		64.4
(2.1) 		75
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.1
(-2.7)
A 		1.3
(-2.5)
A 		0.8
(-3)
A 		7.4
(3)
A 		7
B 2.1
(-2.7)
A 		6.4
(0.2)
A 		1.7
(-3)
A 		10.6
(3)
A 		9
C 0.8
(-3)
A 		3.5
(-1.4)
A 		1.2
(-2.8)
A 		10.8
(3)
A 		10
avr 1.3
(-2.9) 		3.7
(-1.2) 		1.2
(-3) 		9.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 2.9
(-2.2)
A 		0.9
(-3)
A 		1.4
(-2.8)
A 		13.7
(1.8)
A 		16.2
(2.8)
A 		16.8
(3)
A 		16
B 1.7
(-2.8)
A 		0.8
(-3)
A 		1
(-3)
A 		9.3
(-1.5)
A 		21.8
(0.7)
P 		34.6
(3)
P 		34
C 0.7
(-3)
A 		0.7
(-3)
A 		1
(-2.9)
A 		13.8
(-0.1)
A 		27.8
(3)
A 		21.1
(1.5)
A 		27
avr 1.8
(-2.7) 		0.8
(-3) 		1.1
(-2.9) 		12.3
(-0.1) 		21.9
(2.4) 		24.2
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193804_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9348
Sequence Type Exemplar sequence
Representative Public ID C25G4.1 NCBI
Target Description C25G4.1 /REP_DB=WormBase Gene ID /WP=CE05302 /TR=Q18175 /GB=CAA94587.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069974 NCBI Caenorhabditis elegans C25G4.1 (C25G4.1) mRNA, complete cds. 11/11 None
SNAP00000033047 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12442067:12443006:1 9/11 None
GENEFINDER00000033060 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12438979:12443006:1 11/11 None
C25G4.1 ENSEMBL cdna:known chromosome:CEL140:IV:12438650:12443006:1 gene:C25G4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12438655-12443012(+) 84.53 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Ensembl C25G4.1
Entrez Gene 182914 Entrez gene
SwissProt Q18175 EMBL-EBI
WormBase CE05302 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94587 Hypothetical protein C25G4.1 [Caenorhabditis elegans] emb|CAA94576.1| Hypothetical protein C25G4.1 [Caenorhabditis elegans] ref|NP_502375.1| C25G4.1 [Caenorhabditis elegans] 0.0
blast CAA94587 Hypothetical protein C25G4.1 [Caenorhabditis elegans] emb|CAA94576.1| Hypothetical protein C25G4.1 [Caenorhabditis elegans] ref|NP_502375.1| C25G4.1 [Caenorhabditis elegans] 1.0E-100
blast CAE59861 Hypothetical protein CBG03336 [Caenorhabditis briggsae] 3.0E-62
blast CAH60781 Hypothetical protein F08G5.7 [Caenorhabditis elegans] ref|NP_001023122.1| F08G5.7 [Caenorhabditis elegans] 2.0E-52
blast CAH60781 Hypothetical protein F08G5.7 [Caenorhabditis elegans] ref|NP_001023122.1| F08G5.7 [Caenorhabditis elegans] 1.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.2E-8
Pfam IPR001304 EMBL-EBI C-type lectin 1.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 1.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 2.2E-8
Pfam IPR001304 EMBL-EBI C-type lectin 1.3E-5
Sequence
Target Sequence 
>C. ELEGANS:193804_AT
ccgattccatacaaaaaccctcagcgggtgcacaattcacacaatttgttcaaaatattt
tcaaatatgcttttcccttcccttttcctggttttcgcttctgccgtattggcgtccgat
gatttgaatccatgtaattcctcgtggcatttcttcaaaaagactggatgttgctacaag
acatctgatgacatgggaacatggttcgatggtactggaatgtgtgccaagatgcaagtt
ggagcccgattggcgtctcttcgtgatgaagatgaatccaagtttgtggcaaagtctcat
aaatcaggaatcgatgggatccatgcatggactgggctttcgcagacgcaaaccgccaac
aactggacgttcaccgatggctcaaaaccttggtcctccttcttcaccccatacgttttc
ccgaataaccacacgagttgcgttgaaattgtcgacaattggcttgtcgagctatttcaa
aatactggtaaaacacaaccaacgttctgctaccactatcgtaaagccctgtgcaagtat
tgtccagtaccacctgaaattccatctgagccaacaagtact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGATTCCATACAAAAACCCTCAGC 492 263 1516 Antisense
CCTCAGCGGGTGCACAATTCACACA 303 267 1534 Antisense
TTCTGCCGTATTGGCGTCCGATGAT 321 693 1614 Antisense
ATTCCTCGTGGCATTTCTTCAAAAA 252 9 1652 Antisense
CGATTGGCGTCTCTTCGTGATGAAG 671 247 1762 Antisense
ATGCATGGACTGGGCTTTCGCAGAC 266 43 1838 Antisense
GCAAACCGCCAACAACTGGACGTTC 578 315 1863 Antisense
ACCGATGGCTCAAAACCTTGGTCCT 261 87 1888 Antisense
AACGTTCTGCTACCACTATCGTAAA 115 145 2016 Antisense
GTGCAAGTATTGTCCAGTACCACCT 183 463 2046 Antisense
AATTCCATCTGAGCCAACAAGTACT 679 175 2073 Antisense
Sequence Source Affymetrix Proprietary Database