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[193803_s_at] ribosomal protein/ubiquitin-like protein

Description C26F1.4 /REP_DB=WormBase Gene ID /WP=CE06878 /GEN=rps-30 /TR=Q18231 /GB=AAB37076.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ribosomal protein-ubiquitin-like protein
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 08      6grp_total > 34      4grp_total > 09      6grp_highest_sub > 01_02_03      6grp_cgc > 80      6grp_high1_sub > 03      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15694
1 2 3 4 range
A 21987.7
(-3)
P 		23878
(-2.2)
P 		25471.3
(-1.5)
P 		35492.6
(3)
P 		13505
B 23565
(-2.1)
P 		22406.6
(-3)
P 		24168.9
(-1.6)
P 		29763.6
(3)
P 		7357
C 19799
(-3)
P 		22302.4
(-2)
P 		21890.6
(-2.1)
P 		34125.2
(3)
P 		14326
avr 21783.9
(-3) 		22862.3
(-2.4) 		23843.6
(-1.9) 		33127.1
(3) 		11343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6939
1 2 3 4 5 6 range
A 19819.6
(0.1)
P 		18549.9
(-1)
P 		23118.7
(3)
P 		18251.8
(-1.2)
P 		16179.6
(-3)
P 		17929.5
(-1.5)
P 		6939
B 20557.1
(3)
P 		19625.9
(1.7)
P 		19387.2
(1.3)
P 		16387.9
(-3)
P 		17448.2
(-1.5)
P 		16708.3
(-2.5)
P 		4169
C 18387.1
(0)
P 		19871.6
(3)
P 		18751.1
(0.8)
P 		16864.2
(-3)
P 		18909.1
(1.1)
P 		17186.8
(-2.4)
P 		3007
avr 19587.9
(1.5) 		19349.1
(1) 		20419
(3) 		17168
(-3) 		17512.3
(-2.4) 		17274.9
(-2.8) 		3251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2822
1 2 3 4 range
A 8005.7
(3)
P 		5183.3
(-3)
P 		6658.7
(0.1)
P 		5195.4
(-3)
P 		2822
B 7514.7
(3)
P 		5533.9
(-3)
P 		5600.5
(-2.8)
P 		6342.6
(-0.6)
P 		1981
C 6554
(-0.4)
P 		6412.1
(-0.9)
P 		7629.6
(3)
P 		5754
(-3)
P 		1876
avr 7358.1
(3) 		5709.8
(-3) 		6629.6
(0.3) 		5764
(-2.8) 		1648

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3762
1 2 3 4 5 6 range
A 3653.6
(-3)
P 		6597.3
(3)
P 		5034.8
(-0.2)
P 		4629.1
(-1)
P 		4882.3
(-0.5)
P 		4365.3
(-1.5)
P 		2944
B 7152.9
(3)
P 		6532.6
(1.7)
P 		4707.8
(-2.2)
P 		4340.6
(-3)
P 		7089
(2.9)
P 		6230.5
(1)
P 		2812
C 6815.3
(3)
P 		6063.4
(1.7)
P 		4772.5
(-0.6)
P 		3391.4
(-3)
P 		6118.7
(1.8)
P 		5753.4
(1.1)
P 		3424
avr 5873.9
(1.6) 		6397.8
(3) 		4838.4
(-1.1) 		4120.4
(-3) 		6030
(2) 		5449.7
(0.5) 		2277
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193803_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12482
Sequence Type Exemplar sequence
Representative Public ID C26F1.4 NCBI
Target Description C26F1.4 /REP_DB=WormBase Gene ID /WP=CE06878 /GEN=rps-30 /TR=Q18231 /GB=AAB37076.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ribosomal protein-ubiquitin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072606 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-30) (rps-30) mRNA, complete cds. 11/11 A 
SNAP00000018570 ENSEMBL cdna:SNAP chromosome:CEL140:V:7779171:7779735:1 11/11 None
GENEFINDER00000018581 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7779171:7779735:1 11/11 None
C26F1.4.1 ENSEMBL cdna:known chromosome:CEL140:V:7779161:7779828:1 gene:C26F1.4 11/11 A 
C26F1.4.2 ENSEMBL cdna:known chromosome:CEL140:V:7779168:7779808:1 gene:C26F1.4 11/11 A 
C26F1.4.3 ENSEMBL cdna:known chromosome:CEL140:V:7779170:7779823:1 gene:C26F1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7779171-7779736(+) 100.0 100.0
Public Domain and Genome References
Gene Title ribosomal protein/ubiquitin-like protein
Gene Symbol rps-30
Ensembl C26F1.4
Entrez Gene 179154 Entrez gene
SwissProt Q18231 EMBL-EBI
WormBase CE06878 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597536_S_AT similar to Finkel-Biskis-Reilly murine sarcoma virusubiquitously expressed cfa
CANINE:1583349_S_AT similar to Finkel-Biskis-Reilly murine sarcoma virusubiquitously expressed cfa
CANINE_2:CFAAFFX.28280.1.S1_S_AT similar to Finkel-Biskis-Reilly murine sarcoma virusubiquitously expressed cfa
DROSOPHILA_2:1625943_AT Ribosomal protein S30 dm
DROSOPHILA_2:1623997_S_AT Ribosomal protein S30 dm
DROSGENOME1:150281_AT Ribosomal protein S30 dm
PLASMODIUM_ANOPHELES:200019_S_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
HG-U133_PLUS_2:200019_S_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
HG-FOCUS:200019_S_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
HG-U133A:200019_S_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
HG-U133B:200019_S_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
HG-U133A_2:200019_S_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
U133_X3P:200019_S_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
HG-U95AV2:31955_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
U133_X3P:G4503658_3P_A_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
HU35KSUBD:RC_D11747_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 hs
MU11KSUBA:L33715_F_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) mm
MU11KSUBB:MSA.1734.0_F_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) mm
MOE430A:1417452_A_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) mm
MOUSE430A_2:1417452_A_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) mm
MOUSE430_2:1417452_A_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) mm
MG-U74AV2:100141_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) mm
MG-U74AV2:99422_AT Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) (Fau), mRNA mm
RG-U34A:X62671CDS#1_S_AT similar to Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) rn
RG-U34C:RC_AI176302_G_AT similar to Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) rn
RAE230A:1371316_AT similar to Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) rn
RAT230_2:1371316_AT similar to Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37076 Ribosomal protein, small subunit protein 30 [Caenorhabditis elegans] ref|NP_505007.1| Ribosomal Protein, Small subunit family member (rps-30) [Caenorhabditis elegans] 1.0E-59
blast CAE73188 Hypothetical protein CBG20587 [Caenorhabditis briggsae] 4.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 1.6E-10
Pfam IPR006846 EMBL-EBI Ribosomal protein S30 4.7E-34
Sequence
Target Sequence 
>C. ELEGANS:193803_S_AT
tacggatccaaggttcttagcgaggagctcactcttggagaatgccaaattgagagcctc
tccaccctttccgtcaacggaagacttctcggaggaaaggtccacggatccctcgctcgt
gccggaaaggttcgtgctcagaccccaaaggttgacaagcaagacaagaaaaagaagaag
cgcggacgtgcattccgtcgtgtccaatacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGGATCCAAGGTTCTTAGCGAGG 382 647 130 Antisense
TCCAAGGTTCTTAGCGAGGAGCTCA 378 585 136 Antisense
TTCCGTCAACGGAAGACTTCTCGGA 172 697 198 Antisense
GACTTCTCGGAGGAAAGGTCCACGG 549 371 212 Antisense
TCGGAGGAAAGGTCCACGGATCCCT 285 605 218 Antisense
TGCCGGAAAGGTTCGTGCTCAGACC 592 585 249 Antisense
TCGTGCTCAGACCCCAAAGGTTGAC 368 605 261 Antisense
GCTCAGACCCCAAAGGTTGACAAGC 536 299 265 Antisense
GACCCCAAAGGTTGACAAGCAAGAC 280 381 270 Antisense
AAGAAGCGCGGACGTGCATTCCGTC 454 151 304 Antisense
TGCATTCCGTCGTGTCCAATACACT 270 579 318 Antisense
Sequence Source Affymetrix Proprietary Database