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[193801_s_at] Lectin C-type domain short and long forms (2 domains) /// Lectin C-type domain short and long forms (2 domains)

Description C14A6.1 /REP_DB=WormBase Gene ID /WP=CE18493 /TR=Q9XVE1 /GB=CAB03881.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 46      6grp_total > 62      4grp_total > 60      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1931
1 2 3 4 range
A 1707.7
(1.4)
P 		1362.1
(0.3)
P 		2226.9
(3)
P 		296.2
(-3)
P 		1931
B 1645
(3)
P 		1545.5
(2.5)
P 		1576.6
(2.7)
P 		339.9
(-3)
P 		1305
C 1757.9
(3)
P 		1493.2
(1.9)
P 		1649.3
(2.5)
P 		314.1
(-3)
P 		1444
avr 1703.5
(2.5) 		1466.9
(1.6) 		1817.6
(3) 		316.7
(-3) 		1501

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2307
1 2 3 4 5 6 range
A 2192.1
(-2.4)
P 		2209.4
(-2.3)
P 		3835.1
(3)
P 		3511.7
(1.9)
P 		3025.7
(0.4)
P 		1995.5
(-3)
P 		1840
B 2187.9
(-2.7)
P 		2118.4
(-3)
P 		3370.9
(3)
P 		3095.2
(1.7)
P 		3029.5
(1.4)
P 		2243
(-2.4)
P 		1253
C 1925.3
(-3)
P 		2500.1
(-1.5)
P 		4232.1
(3)
P 		3311
(0.6)
P 		3228.9
(0.4)
P 		2094
(-2.6)
P 		2307
avr 2101.8
(-3) 		2276
(-2.4) 		3812.7
(3) 		3306
(1.2) 		3094.7
(0.5) 		2110.8
(-3) 		1711
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 621.8
(3)
P 		295.7
(-0.4)
P 		582.2
(2.6)
P 		43.4
(-3)
P 		578
B 524.6
(3)
P 		381.7
(1.1)
P 		365.3
(0.9)
P 		72.4
(-3)
P 		452
C 581.9
(3)
P 		429.3
(1.3)
P 		574.8
(2.9)
P 		53
(-3)
P 		529
avr 576.1
(3) 		368.9
(0.6) 		507.4
(2.2) 		56.3
(-3) 		520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 404.1
(-3)
P 		785.8
(1.5)
P 		835.2
(2.1)
P 		890.6
(2.7)
P 		913
(3)
P 		485.8
(-2)
P 		509
B 761.3
(-2.4)
P 		705.1
(-3)
P 		818.5
(-1.7)
P 		819.8
(-1.7)
P 		1230.8
(3)
P 		836.4
(-1.5)
P 		526
C 713.6
(-2.3)
P 		762.9
(-1.6)
P 		1077.1
(3)
P 		665.8
(-3)
P 		1044.8
(2.5)
P 		701
(-2.5)
P 		411
avr 626.3
(-3) 		751.3
(-1.3) 		910.3
(0.9) 		792.1
(-0.7) 		1062.9
(3) 		674.4
(-2.3) 		437
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193801_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14042
Sequence Type Exemplar sequence
Representative Public ID C14A6.1 NCBI
Target Description C14A6.1 /REP_DB=WormBase Gene ID /WP=CE18493 /TR=Q9XVE1 /GB=CAB03881.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075146(11), NM_075428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075146 NCBI Caenorhabditis elegans C-type LECtin family member (clec-48) (clec-48) mRNA, complete cds. 11/11 A 
NM_075428 NCBI Caenorhabditis elegans C-type LECtin family member (clec-49) (clec-49) mRNA, complete cds. 11/11 A 
SNAP00000009394 ENSEMBL cdna:SNAP chromosome:CEL140:V:18160601:18162142:1 11/11 None
GENEFINDER00000009400 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18159722:18162142:1 11/11 None
SNAP00000038165 ENSEMBL cdna:SNAP chromosome:CEL140:V:19747010:19749184:-1 11/11 None
GENEFINDER00000038173 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19747010:19749184:-1 11/11 None
C14A6.1 ENSEMBL cdna:known chromosome:CEL140:V:18160601:18162142:1 gene:C14A6.1 11/11 A 
W04E12.6 ENSEMBL cdna:known chromosome:CEL140:V:19746985:19749210:-1 gene:W04E12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18160600-18162142(+) 100.0 100.0
chrV:19747009-19749178(-) 90.79 90.79
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-48
clec-49
Ensembl C14A6.1
W04E12.6
Entrez Gene 180188 Entrez gene
180298 Entrez gene
SwissProt Q9XVE1 EMBL-EBI
Q9XUL6 EMBL-EBI
WormBase CE18493 Wormbase
CE19001 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.5438.6.S1_AT similar to Macrophage mannose receptor precursor (MMR) (CD206 antigen) gga
CHICKEN:GGAAFFX.5449.1.S1_AT similar to Macrophage mannose receptor precursor (MMR) (CD206 antigen) gga
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03881 Hypothetical protein C14A6.1 [Caenorhabditis elegans] ref|NP_507547.1| C-type LECtin family member (clec-48) [Caenorhabditis elegans] 1.0E-174
blast CAB04910 Hypothetical protein W04E12.6 [Caenorhabditis elegans] ref|NP_507829.1| C-type LECtin family member (clec-49) [Caenorhabditis elegans] 1.0E-174
blast CAB04910 Hypothetical protein W04E12.6 [Caenorhabditis elegans] ref|NP_507829.1| C-type LECtin family member (clec-49) [Caenorhabditis elegans] 1.0E-169
blast CAB03881 Hypothetical protein C14A6.1 [Caenorhabditis elegans] ref|NP_507547.1| C-type LECtin family member (clec-48) [Caenorhabditis elegans] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.8E-20
Pfam IPR001304 EMBL-EBI C-type lectin 8.9E-25
Pfam IPR001304 EMBL-EBI C-type lectin 3.0E-21
Pfam IPR001304 EMBL-EBI C-type lectin 1.3E-23
Pfam IPR001304 EMBL-EBI C-type lectin 2.8E-20
Pfam IPR001304 EMBL-EBI C-type lectin 8.9E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009400 1 74-96
Sequence
Target Sequence 
>C. ELEGANS:193801_S_AT
gtgtgtcccgtcttgtgatcaaggctggacctacttctctccaaccgacttctgttatcg
tgtgtaccatggtgaaaagtttaatgacgctgaggcatcgtgtgtgctgttgggaggaca
tctcgcctcgattcactcgctggcagaaaacacttttgtgaataacattgcctcctgtgg
aatcaaagaaggtaaatatgaacacctcgcatggatcggtatgcacaaagtcggtcagga
ctgggtatggactgacggtaccccatcggactacttcaactgggctccaaagcagcctga
caatccgaaaaaagaattctgcgtgcaaactgctcccgatctttctcatgataaatggta
tgaaaactggaacaatttggagtgtaatgaagtgatgcgggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGTCCCGTCTTGTGATCAAGGC 538 487 543 Antisense
GTCCCGTCTTGTGATCAAGGCTGGA 7 477 547 Antisense
TGATCAAGGCTGGACCTACTTCTCT 394 565 558 Antisense
TCTCCAACCGACTTCTGTTATCGTG 15 611 580 Antisense
ACCGACTTCTGTTATCGTGTGTACC 345 89 586 Antisense
GACTTCTGTTATCGTGTGTACCATG 635 371 589 Antisense
TGTTATCGTGTGTACCATGGTGAAA 652 561 595 Antisense
AATGACGCTGAGGCATCGTGTGTGC 95 165 625 Antisense
TGACGCTGAGGCATCGTGTGTGCTG 58 571 627 Antisense
ACCCCATCGGACTACTTCAACTGGG 96 91 802 Antisense
GGAGTGTAATGAAGTGATGCGGGCT 234 517 921 Antisense
Sequence Source Affymetrix Proprietary Database