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[193800_at] Lectin C-type domain short and long forms (2 domains)

Description C14A6.1 /REP_DB=WormBase Gene ID /WP=CE18493 /TR=Q9XVE1 /GB=CAB03881.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_high_8_8 > 51      6grp_highest_nonorm > 53      6grp_total > 62      4grp_total > 60      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 494
1 2 3 4 range
A 494.3
(2.2)
P 		547.6
(3)
P 		395.7
(0.8)
P 		124.7
(-3)
A 		423
B 529.1
(1.8)
P 		536.2
(1.9)
P 		619
(3)
P 		156.9
(-3)
P 		462
C 527.1
(1.9)
P 		550.4
(2.2)
P 		613.6
(3)
P 		156.6
(-3)
A 		457
avr 516.8
(2.6) 		544.7
(3) 		542.8
(3) 		146.1
(-3) 		399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1217
1 2 3 4 5 6 range
A 460.1
(-3)
P 		659.2
(-1.2)
P 		1136.2
(3)
P 		976.7
(1.6)
P 		1050.8
(2.2)
P 		574
(-2)
P 		676
B 596.1
(-3)
P 		842.7
(-1.6)
P 		1677.5
(3)
P 		1122.7
(-0.1)
P 		1038
(-0.5)
P 		747.9
(-2.2)
P 		1081
C 509.9
(-3)
P 		661.7
(-1.7)
P 		1235.6
(3)
P 		1027
(1.3)
P 		921.3
(0.4)
P 		770.4
(-0.8)
P 		726
avr 522
(-3) 		721.2
(-1.6) 		1349.8
(3) 		1042.1
(0.8) 		1003.4
(0.5) 		697.4
(-1.7) 		828
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 180
(3)
P 		118.9
(0.7)
P 		103.5
(0.2)
P 		18.2
(-3)
A 		162
B 168.7
(3)
P 		132.4
(1.4)
P 		143.4
(1.9)
P 		33.4
(-3)
P 		135
C 174.5
(1.7)
P 		158.3
(1.2)
P 		213.8
(3)
P 		26.4
(-3)
A 		187
avr 174.4
(3) 		136.5
(1.5) 		153.6
(2.2) 		26
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 84.8
(-3)
P 		234.5
(0.9)
P 		247.4
(1.2)
P 		247.7
(1.2)
P 		317.1
(3)
P 		139.8
(-1.6)
P 		232
B 207.4
(-3)
P 		280.5
(-1)
P 		407.3
(2.6)
P 		297.4
(-0.5)
P 		421.7
(3)
P 		278.9
(-1)
P 		214
C 189
(-3)
P 		201.9
(-2.4)
P 		314.5
(3)
P 		206.5
(-2.2)
P 		298.1
(2.2)
P 		257.9
(0.3)
P 		126
avr 160.4
(-3) 		239
(-0.5) 		323.1
(2.3) 		250.5
(-0.1) 		345.6
(3) 		225.5
(-0.9) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14042
Sequence Type Exemplar sequence
Representative Public ID C14A6.1 NCBI
Target Description C14A6.1 /REP_DB=WormBase Gene ID /WP=CE18493 /TR=Q9XVE1 /GB=CAB03881.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075146 NCBI Caenorhabditis elegans C-type LECtin family member (clec-48) (clec-48) mRNA, complete cds. 11/11 A 
SNAP00000009394 ENSEMBL cdna:SNAP chromosome:CEL140:V:18160601:18162142:1 11/11 None
GENEFINDER00000009400 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18159722:18162142:1 11/11 None
C14A6.1 ENSEMBL cdna:known chromosome:CEL140:V:18160601:18162142:1 gene:C14A6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009392 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009403 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18160600-18162142(+) 100.0 100.0
chrV:19747009-19749178(-) 90.79 90.79
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-48
Ensembl C14A6.1
Entrez Gene 180188 Entrez gene
SwissProt Q9XVE1 EMBL-EBI
WormBase CE18493 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.5438.6.S1_AT similar to Macrophage mannose receptor precursor (MMR) (CD206 antigen) gga
CHICKEN:GGAAFFX.5449.1.S1_AT similar to Macrophage mannose receptor precursor (MMR) (CD206 antigen) gga
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03881 Hypothetical protein C14A6.1 [Caenorhabditis elegans] ref|NP_507547.1| C-type LECtin family member (clec-48) [Caenorhabditis elegans] 1.0E-174
blast CAB04910 Hypothetical protein W04E12.6 [Caenorhabditis elegans] ref|NP_507829.1| C-type LECtin family member (clec-49) [Caenorhabditis elegans] 1.0E-169
blast CAB04909 Hypothetical protein W04E12.8 [Caenorhabditis elegans] ref|NP_507830.1| C-type LECtin family member (clec-50) [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.8E-20
Pfam IPR001304 EMBL-EBI C-type lectin 8.9E-25
Pfam IPR001304 EMBL-EBI C-type lectin 2.8E-20
Pfam IPR001304 EMBL-EBI C-type lectin 8.9E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009400 1 74-96
Sequence
Target Sequence 
>C. ELEGANS:193800_AT
gcgagcctcaatccggaagtgattgtgcaattcaggataagggagacggaacctggtcgg
ctattggatgtacttcctacaggccatatttatgtgttactcctgttattatgactgcca
cgtgtccaccaatcactacacccattccaaccacatgccctaccccagctccatgtccca
ttaaacagtgtgtcccgtcttgtgatcaaggctggacctacttctctccaaccgacttct
gttatcgtgtgtaccatggtgaaaagtttaatgacgctgaggcatcgtgtgtgctgttgg
gaggacatctcgcctcgattcactcgctggcagaaaacacttttgtgaataacattgcct
cctgtggaatcaaagaaggtaaatatgaacacctcgcatggatcggtatgcacaaagtcg
gtcaggactgggtatggactgacggtaccccatcggactacttcaactgggctccaaagc
agcctgacaatccgaaaaaagaattctgcgtgcaaactgctcccgatctttctcatgata
aat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGCCTCAATCCGGAAGTGATTG 68 289 356 Antisense
GCCATATTTATGTGTTACTCCTGTT 574 281 438 Antisense
ATGTGTTACTCCTGTTATTATGACT 588 49 447 Antisense
CAGCTCCATGTCCCATTAAACAGTG 498 203 521 Antisense
GTCCCATTAAACAGTGTGTCCCGTC 568 473 530 Antisense
CTGTTGGGAGGACATCTCGCCTCGA 258 239 649 Antisense
CTCGATTCACTCGCTGGCAGAAAAC 409 233 669 Antisense
GAATAACATTGCCTCCTGTGGAATC 620 325 702 Antisense
ATGAACACCTCGCATGGATCGGTAT 634 43 740 Antisense
AAAAGAATTCTGCGTGCAAACTGCT 134 133 852 Antisense
GCTCCCGATCTTTCTCATGATAAAT 355 299 874 Antisense
Sequence Source Affymetrix Proprietary Database