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[193799_at] CUB domain, Lectin C-type domain short and long forms

Description F31D4.4 /REP_DB=WormBase Gene ID /WP=CE15930 /TR=O45419 /GB=CAB07372.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=CUB domain, Lectin C-type domain short and long forms
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 80      6grp_total > 06      4grp_total > 13      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 216.8
(-0.3)
P 		151.7
(-1.8)
P 		95.2
(-3)
P 		367.2
(3)
P 		272
B 275.7
(1)
P 		111.8
(-3)
P 		119.5
(-2.8)
P 		358.7
(3)
P 		247
C 235.3
(-0.7)
P 		116.6
(-2.7)
P 		97.1
(-3)
P 		455.3
(3)
P 		358
avr 242.6
(-0.1) 		126.7
(-2.5) 		103.9
(-3) 		393.7
(3) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 305.8
(3)
P 		217.9
(0.1)
P 		123.6
(-3)
P 		136.7
(-2.6)
P 		143.4
(-2.3)
P 		143
(-2.4)
P 		182
B 241.7
(3)
P 		149.7
(-0.8)
P 		156.1
(-0.5)
P 		204.5
(1.5)
P 		164.3
(-0.2)
P 		95.3
(-3)
P 		146
C 320.2
(3)
P 		205.2
(-0.3)
P 		170.4
(-1.3)
P 		124
(-2.7)
P 		140
(-2.2)
P 		113.3
(-3)
P 		207
avr 289.2
(3) 		190.9
(-0.4) 		150
(-1.9) 		155.1
(-1.7) 		149.2
(-1.9) 		117.2
(-3) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 78.9
(3)
P 		32.9
(-2.1)
P 		24.9
(-3)
P 		53.7
(0.2)
P 		54
B 87.9
(3)
P 		27.6
(-3)
P 		27.7
(-3)
P 		76.4
(1.9)
P 		60
C 77.9
(3)
P 		33.5
(-3)
P 		33.9
(-2.9)
P 		76.8
(2.9)
P 		44
avr 81.6
(3) 		31.3
(-2.7) 		28.8
(-3) 		69
(1.6) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 56.4
(0.5)
P 		77.5
(3)
P 		26.9
(-3)
P 		34.7
(-2.1)
P 		43.3
(-1.1)
P 		34.8
(-2.1)
P 		51
B 84.1
(3)
P 		49.8
(-1.2)
P 		37.9
(-2.7)
P 		54.2
(-0.7)
P 		66.7
(0.9)
P 		35.5
(-3)
P 		49
C 118.7
(3)
P 		62.6
(-0.6)
P 		43.4
(-1.8)
P 		24.9
(-3)
P 		45.3
(-1.7)
P 		37.9
(-2.2)
P 		94
avr 86.4
(3) 		63.3
(0.2) 		36.1
(-3) 		37.9
(-2.8) 		51.8
(-1.1) 		36.1
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14082
Sequence Type Exemplar sequence
Representative Public ID F31D4.4 NCBI
Target Description F31D4.4 /REP_DB=WormBase Gene ID /WP=CE15930 /TR=O45419 /GB=CAB07372.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=CUB domain, Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075626 NCBI Caenorhabditis elegans F31D4.4 (F31D4.4) mRNA, complete cds. 11/11 None
SNAP00000041983 ENSEMBL cdna:SNAP chromosome:CEL140:V:20845799:20849945:-1 9/11 None
GENEFINDER00000041991 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20845799:20848717:-1 11/11 None
F31D4.4 ENSEMBL cdna:known chromosome:CEL140:V:20846011:20848717:-1 gene:F31D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20846010-20848717(-) 100.0 100.0
Public Domain and Genome References
Gene Title CUB domain, Lectin C-type domain short and long forms
Ensembl F31D4.4
Entrez Gene 185147 Entrez gene
SwissProt O45419 EMBL-EBI
WormBase CE15930 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07372 Hypothetical protein F31D4.4 [Caenorhabditis elegans] ref|NP_508027.1| F31D4.4 [Caenorhabditis elegans] 0.0
blast CAE60767 Hypothetical protein CBG04455 [Caenorhabditis briggsae] 1.0E-158
blast CAE60767 Hypothetical protein CBG04455 [Caenorhabditis briggsae] 1.0E-157
blast CAB07372 Hypothetical protein F31D4.4 [Caenorhabditis elegans] ref|NP_508027.1| F31D4.4 [Caenorhabditis elegans] 1.0E-104
blast CAE60767 Hypothetical protein CBG04455 [Caenorhabditis briggsae] 5.0E-84
blast CAB01149 Hypothetical protein F08H9.5 [Caenorhabditis elegans] ref|NP_506588.1| F08H9.5 [Caenorhabditis elegans] 7.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.1E-9
Pfam IPR000859 EMBL-EBI CUB 1.5E-12
Pfam IPR000859 EMBL-EBI CUB 1.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000041983 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:193799_AT
caattcttcatgtgccagagaccggcagaagggataataaccacgtggcacagagacgaa
gagggcacaatcgtcagtccaaattggccaaattcgtatgaaaatctggaatatgataca
cacattataaagtcagagcctggaacaagaatattaatgtattttgaagaagtggataca
gaacataattgtgatattattaccgtaactgatgattacggtatttctggaagaacactt
ttccgtctttctggttcacatcgtaatcactcagttatcagtaatcgaaatcatgttatg
attaatttcaagtctgatgaggataatattggaaaaggtttcgttatgagatacaagata
ctacgtccacttcctgtgaaagtgttctcatcgaactcttttggcacagttacatcgaac
aattatccaaattctccggattccttcctcatccaatactatctcattcaatgtccaatt
gctcatcacgtggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCTTCATGTGCCAGAGACCGG 377 179 430 Antisense
GAAGGGATAATAACCACGTGGCACA 170 335 457 Antisense
GAAGAGGGCACAATCGTCAGTCCAA 23 339 487 Antisense
TGGAAGAACACTTTTCCGTCTTTCT 271 547 657 Antisense
CGTCTTTCTGGTTCACATCGTAATC 279 247 673 Antisense
GATACAAGATACTACGTCCACTTCC 138 423 779 Antisense
CTTCCTGTGAAAGTGTTCTCATCGA 492 219 799 Antisense
TTCTCATCGAACTCTTTTGGCACAG 32 693 814 Antisense
TATCCAAATTCTCCGGATTCCTTCC 226 657 853 Antisense
TTCCTCATCCAATACTATCTCATTC 316 699 874 Antisense
TGTCCAATTGCTCATCACGTGGCAC 5 557 901 Antisense
Sequence Source Affymetrix Proprietary Database