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[193796_at] mitochrondrial 2-oxoglutarate/malate carrier protein

Description B0432.4 /REP_DB=WormBase Gene ID /WP=CE07742 /TR=P90992 /GB=AAB37890.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=mitochrondrial 2-oxoglutarate-malate carrier protein
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 33      6grp_total > 52      4grp_total > 62      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 695
1 2 3 4 range
A 1156.1
(3)
P 		826.5
(-0.2)
P 		901.7
(0.6)
P 		528.5
(-3)
P 		628
B 1164.2
(3)
P 		715.5
(-0.9)
P 		896.8
(0.7)
P 		469
(-3)
P 		695
C 1059
(3)
P 		869.8
(1.1)
P 		1025
(2.7)
P 		473
(-3)
P 		586
avr 1126.4
(3) 		803.9
(-0) 		941.2
(1.3) 		490.2
(-3) 		636

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1899
1 2 3 4 5 6 range
A 1216
(-1.7)
P 		1241
(-1.6)
P 		2422
(3)
P 		1701.6
(0.2)
P 		1317
(-1.3)
P 		877.5
(-3)
P 		1545
B 1187
(-2.6)
P 		1681.7
(-0.9)
P 		2776.7
(3)
P 		1914.5
(-0)
P 		1481.7
(-1.6)
P 		1076.3
(-3)
P 		1700
C 1017.7
(-3)
P 		1808.6
(1.7)
P 		2036.6
(3)
P 		1848.9
(1.9)
P 		1046.1
(-2.8)
P 		1095.5
(-2.5)
P 		1019
avr 1140.2
(-2.5) 		1577.1
(-0.6) 		2411.8
(3) 		1821.7
(0.5) 		1281.6
(-1.9) 		1016.4
(-3) 		1395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 420.9
(3)
P 		179.4
(-1.2)
P 		235.7
(-0.2)
P 		77.4
(-3)
P 		344
B 371.3
(3)
P 		176.7
(-1.3)
P 		207.8
(-0.6)
P 		99.9
(-3)
P 		271
C 350.6
(2.9)
P 		250.1
(0.7)
P 		357.2
(3)
P 		79.7
(-3)
P 		278
avr 380.9
(3) 		202.1
(-0.6) 		266.9
(0.7) 		85.7
(-3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 461
1 2 3 4 5 6 range
A 224.2
(-2.8)
P 		441.3
(1.4)
P 		527.5
(3)
P 		431.6
(1.2)
P 		397.4
(0.5)
P 		213.6
(-3)
P 		314
B 413
(-2.7)
P 		559.8
(0.5)
P 		674.3
(3)
P 		507.1
(-0.7)
P 		602
(1.4)
P 		401.4
(-3)
P 		273
C 377.2
(-1.9)
P 		551.9
(3)
P 		518.3
(2.1)
P 		371.8
(-2.1)
P 		338.5
(-3)
P 		366.7
(-2.2)
P 		213
avr 338.1
(-2.7) 		517.7
(1.6) 		573.4
(3) 		436.8
(-0.3) 		446
(-0.1) 		327.2
(-3) 		246
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4388
Sequence Type Exemplar sequence
Representative Public ID B0432.4 NCBI
Target Description B0432.4 /REP_DB=WormBase Gene ID /WP=CE07742 /TR=P90992 /GB=AAB37890.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=mitochrondrial 2-oxoglutarate-malate carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061293(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061293 NCBI Caenorhabditis elegans B0432.4 (B0432.4) mRNA, complete cds. 10/11 None
SNAP00000033639 ENSEMBL cdna:SNAP chromosome:CEL140:II:286632:290304:1 10/11 None
GENEFINDER00000033652 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:286632:288472:1 10/11 None
B0432.4 ENSEMBL cdna:known chromosome:CEL140:II:286632:288660:1 gene:B0432.4 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:286631-288605(+) 100.0 100.0
Public Domain and Genome References
Gene Title mitochrondrial 2-oxoglutarate/malate carrier protein
Ensembl B0432.4
Entrez Gene 173414 Entrez gene
SwissProt P90992 EMBL-EBI
WormBase CE32102 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13617_AT mitochondrial substrate carrier family protein at
ATH1-121501:264000_AT mitochondrial substrate carrier family protein at
CANINE:1585137_AT similar to Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) cfa
CANINE_2:CFAAFFX.24259.1.S1_AT similar to Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) cfa
CANINE_2:CFAAFFX.24259.1.S1_S_AT similar to Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) cfa
CANINE_2:CFAAFFX.24260.1.S1_AT similar to Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) cfa
DROSOPHILA_2:1630575_AT dm
DROSGENOME1:141757_AT dm
HG-U133_PLUS_2:207088_S_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133A:207088_S_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133A_2:207088_S_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133_PLUS_2:209003_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133A:209003_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-FOCUS:209003_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133A_2:209003_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HUGENEFL:X66114_RNA1_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
U133_X3P:G4506996_3P_A_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U95AV2:32197_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
MG-U74AV2:160295_AT solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 mm
MOE430A:1426586_AT solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 mm
MOUSE430A_2:1426586_AT solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 mm
MOUSE430_2:1426586_AT solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 mm
MU19KSUBB:TC34374_AT Solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 (Slc25a11), mRNA mm
MU19KSUBC:TC41538_AT Solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 (Slc25a11), mRNA mm
RG-U34A:U84727_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 rn
RAE230A:1370060_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 rn
RAT230_2:1370060_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37890 Hypothetical protein B0432.4 [Caenorhabditis elegans] ref|NP_493694.2| B0432.4 [Caenorhabditis elegans] 1.0E-163
blast AAB37890 Hypothetical protein B0432.4 [Caenorhabditis elegans] ref|NP_493694.2| B0432.4 [Caenorhabditis elegans] 1.0E-161
blast CAE62839 Hypothetical protein CBG07018 [Caenorhabditis briggsae] 1.0E-150
blast CAE62839 Hypothetical protein CBG07018 [Caenorhabditis briggsae] 1.0E-148
blast AAH72308 MGC82600 protein [Xenopus laevis] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.3E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.2E-25
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.7E-29
Sequence
Target Sequence 
>C. ELEGANS:193796_AT
gagatggacggcttcctgttgaacagcgtcgtaattatacaggagtcgtcaatgccctta
cccgtattacaaaagaagaaggtgtcctaactctttggcgtggatgtacacctacagtac
tccgagcaatggtcgtaaatgccgcccaacttgccacatattcccaggcgaaacaggcac
ttttggcttctggaaaggttcaagatggcattttctgccactttttggcatcaatgatca
gtggattggcaactacaattgcatcgatgcctgtcgatattgcaaaaacgagaattcaat
caatgaaagttattgatggaaaaccggaatataagaatgcttttgatgtttggggaaagg
tcatcaaaaacgaaggaatcttcgccctctggaagggctttaccccatattacatgcgtc
ttggaccccataccgtgctcactttcatcattttggaacaaatgaatgccgcctacttcc
aatatgtgctcaagcgagatgtgaccagtgccttgttgtgttgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATGGACGGCTTCCTGTTGAACA 96 397 416 Antisense
TACAGGAGTCGTCAATGCCCTTACC 355 643 453 Antisense
AGAAGGTGTCCTAACTCTTTGGCGT 413 75 492 Antisense
TCTTTGGCGTGGATGTACACCTACA 115 609 507 Antisense
TACACCTACAGTACTCCGAGCAATG 609 641 522 Antisense
GAGCAATGGTCGTAAATGCCGCCCA 63 391 539 Antisense
CCAACTTGCCACATATTCCCAGGCG 661 275 561 Antisense
GGCGAAACAGGCACTTTTGGCTTCT 432 517 582 Antisense
GCATTTTCTGCCACTTTTTGGCATC 673 307 623 Antisense
GAATCTTCGCCCTCTGGAAGGGCTT 407 323 791 Antisense
TGACCAGTGCCTTGTTGTGTTGTGT 11 571 917 Antisense
Sequence Source Affymetrix Proprietary Database