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[193795_s_at] S. pombe adenylyl cyclase-associated protein (weak)

Description C23G10.8 /REP_DB=WormBase Gene ID /WP=CE25784 /TR=Q9GYR5 /GB=AAF99879.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=S. pombe adenylyl cyclase-associated protein (weak)
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 75      6grp_total > 36      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 601
1 2 3 4 range
A 1263.4
(3)
P 		1152.7
(1.1)
P 		971.7
(-2.1)
P 		922
(-3)
P 		341
B 1307.9
(3)
P 		1055.8
(0.3)
P 		1021.4
(-0.1)
P 		748.5
(-3)
P 		559
C 1349.6
(3)
P 		963
(-2.3)
P 		1178.1
(0.7)
P 		911
(-3)
P 		439
avr 1307
(3) 		1057.2
(-0.4) 		1057.1
(-0.4) 		860.5
(-3) 		447

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 1036.7
(1.1)
P 		1176.7
(2.9)
P 		716.9
(-3)
P 		851.4
(-1.3)
P 		780.1
(-2.2)
P 		1186.3
(3)
P 		469
B 886.2
(1.6)
P 		928.4
(3)
P 		810.3
(-0.9)
P 		770.9
(-2.2)
P 		746.5
(-3)
P 		905.7
(2.3)
P 		182
C 1147.3
(3)
P 		993.7
(1.4)
P 		1133.1
(2.9)
P 		578
(-3)
P 		853.3
(-0.1)
P 		888.9
(0.3)
P 		569
avr 1023.4
(2.8) 		1032.9
(3) 		886.8
(0.1) 		733.4
(-3) 		793.3
(-1.8) 		993.6
(2.2) 		300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 460
(3)
P 		250.2
(-0.9)
P 		254
(-0.8)
P 		135
(-3)
P 		325
B 417.1
(3)
P 		260.7
(-0.6)
P 		236.7
(-1.2)
P 		159.5
(-3)
P 		258
C 446.7
(3)
P 		276.9
(-0.5)
P 		410.6
(2.3)
P 		153.6
(-3)
P 		293
avr 441.3
(3) 		262.6
(-0.7) 		300.4
(0.1) 		149.4
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 191.1
(-2.2)
P 		418.5
(3)
P 		156.1
(-3)
P 		215.9
(-1.6)
P 		235.4
(-1.2)
P 		288.8
(0)
P 		262
B 308.3
(1.7)
P 		309
(1.8)
P 		196.8
(-3)
P 		204.2
(-2.7)
P 		303.3
(1.5)
P 		337.7
(3)
P 		141
C 425.3
(3)
P 		303.2
(0.6)
P 		288.4
(0.3)
P 		116.2
(-3)
P 		276.1
(0.1)
P 		297.6
(0.5)
P 		309
avr 308.2
(1.7) 		343.6
(3) 		213.8
(-1.7) 		178.8
(-3) 		271.6
(0.4) 		308
(1.7) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193795_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6485
Sequence Type Exemplar sequence
Representative Public ID C23G10.8 NCBI
Target Description C23G10.8 /REP_DB=WormBase Gene ID /WP=CE25784 /TR=Q9GYR5 /GB=AAF99879.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=S. pombe adenylyl cyclase-associated protein (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065947 NCBI Caenorhabditis elegans C23G10.8 (C23G10.8) mRNA, complete cds. 11/11 None
SNAP00000025617 ENSEMBL cdna:SNAP chromosome:CEL140:III:6202699:6205459:-1 11/11 None
GENEFINDER00000025646 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6202699:6206142:-1 11/11 None
C23G10.8 ENSEMBL cdna:known chromosome:CEL140:III:6202566:6206142:-1 gene:C23G10.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6202697-6206141(-) 98.26 100.0
Public Domain and Genome References
Gene Title S. pombe adenylyl cyclase-associated protein (weak)
Ensembl C23G10.8
Entrez Gene 175878 Entrez gene
SwissProt Q9GYR5 EMBL-EBI
WormBase CE25784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99879 Hypothetical protein C23G10.8 [Caenorhabditis elegans] ref|NP_498348.1| C23G10.8 [Caenorhabditis elegans] 0.0
blast CAE56536 Hypothetical protein CBG24263 [Caenorhabditis briggsae] 0.0
blast T15578 hypothetical protein C23G10.9 - Caenorhabditis elegans 4.0E-98
Sequence
Target Sequence 
>C. ELEGANS:193795_S_AT
atcgtcttcaatcaatccgtcgaagtttggcagacaccgctgaaagagctgaaacagagg
gaccatcatcgtcgacaggaccatcgatatccgctcccccaattccttcaaggccaggac
attccaattatcgaatggctgcaggacgggaaagagatagagaagaagaacgagaaaaag
atagagaacgacttcaatctcaattatcaacgagttcttctggaccacaagggtccgcat
caagaaaagaacgtatggagtataaaataccaacgacatctagaaggaaatttggaaaag
atagggatcgtttgccagagaagtcgtcttctgatagaggaagagataaacacctcgaca
ctcccaccaaaaaacgtgtaaaccagtctcctccatcgcggaaagcagctccatcgcctg
ctaaaaagccagccatatccacgtcaacaccagcggtcgttgttcctccgaagccaaagc
gaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTCTTCAATCAATCCGTCGAAG 306 35 2285 Antisense
TCCGTCGAAGTTTGGCAGACACCGC 656 591 2300 Antisense
ACAGAGGGACCATCATCGTCGACAG 349 107 2338 Antisense
TCGACAGGACCATCGATATCCGCTC 157 601 2356 Antisense
CCCCAATTCCTTCAAGGCCAGGACA 195 1 2381 Antisense
GACCACAAGGGTCCGCATCAAGAAA 232 385 2507 Antisense
GGGATCGTTTGCCAGAGAAGTCGTC 621 495 2588 Antisense
TCCATCGCGGAAAGCAGCTCCATCG 688 585 2676 Antisense
GCAGCTCCATCGCCTGCTAAAAAGC 451 313 2689 Antisense
CTAAAAAGCCAGCCATATCCACGTC 179 227 2705 Antisense
TTGTTCCTCCGAAGCCAAAGCGAGA 633 701 2744 Antisense
Sequence Source Affymetrix Proprietary Database